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Protein Overview: gi|110743259, gi...

General Information:
Name(s) found: gi|38603878 [NCBI NR]
gi|30690444 [NCBI NR]
gi|110743259 [NCBI NR]
gi|110740973 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|38603878|gb|AAR24684.1| At5g26880 [Arabidopsis thaliana] [NCBI NR]
  • gi|30690444|ref|NP_198040.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110743259|dbj|BAE99520.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110740973|dbj|BAE98581.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 263 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: RNA methyltransferase activity [IEA][ISS]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD  60
   61 KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR TCAASAVGLH LVGPLGFQVD 120
  121 DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY 180
  181 LLFGSETSGL PPEALSDCNH EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE 240
  241 QIECAPQGCV NGEEPLLTED IFA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..263] PSI-BLAST 36.221849 Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA methyltransferase activity
    		•  4.77771076540343 bayes_pls_golite062009
  • methyltransferase activity
    		•  4.0901595540349 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.01958090893547 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  3.659149846946 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.59156540645412 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  2.52700462137917 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  2.29844424181442 bayes_pls_golite062009
  • tRNA (guanine-N1-)-methyltransferase activity
    		•  2.0947794364355 bayes_pls_golite062009
  • transferase activity
    		•  1.84002196534744 bayes_pls_golite062009
  • catalytic activity
    		•  1.16774040077235 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  0.47764353619615 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.0655574594365502 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle