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Protein Overview: gi|38490053, gi|...

General Information:
Name(s) found: gi|79528136 [NCBI NR]
gi|38490053 [NCBI NR]
gi|110738778 [NCBI NR]
Description(s) found:
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  • gi|79528136|ref|NP_199127.3| TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|38490053|gb|AAR21620.1| TATA-binding protein associated factor 4b [Arabidopsis thaliana] [NCBI NR]
  • gi|110738778|dbj|BAF01312.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • TATA-binding protein associated factor 4b [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Similar to transcription initiation factor IID (TFIID) component TAF4 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: TAF4 | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor | chr5:17332836-17338372 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription initiation factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: TAF4, TAF4B | TBP-associated factor 4 | chr5:17315608-17321144 REVERSE LENGTH=823 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At5g43130 (Fragment) OS=Arabidopsis thaliana GN=TAF4B PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4K4L7, Isoform 2 of Transcription initiation factor TFIID subunit 4b OS=Arabidopsis thaliana GN=TAF4B [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 823 amino acids

    Gene Ontology:
    Cellular Component: transcription factor TFIID complex [IEA]
    Biological Process: transcription initiation [IEA]
    Molecular Function: transcription initiation factor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST  60
   61 WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK RANEPHLQHN QPQDLHRAGQ 120
  121 LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN 180
  181 VNPINRNPKQ VPFAALLPTL MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ 240
  241 MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ 300
  301 GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG 360
  361 STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF QNSSSLPLNS APGQGSSVSH 420
  421 VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN 480
  481 SRGPLGTSQG GANARMPPKK PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV 540
  541 TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL 600
  601 KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV 660
  661 KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG VKGNKEDDDK MRTTAANVAA 720
  721 RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR 780
  781 VGKNQGSSLQ PKVVRTISVK DVVAVLEREP QMSKSTLMYR LIQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..574] PSI-BLAST 3.522879 No description for 1y0fA was found.
    2 View Details [575..823] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle