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Protein Overview: gi|29144809, gi|...

General Information:
Name(s) found: gi|29144809 [NCBI NR]
gi|29140448 [NCBI NR]
Description(s) found:
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  • gi|29144809|ref|NP_808151.1| specificity determinant for hsdM and hsdR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR]
  • gi|29140448|gb|AAO72011.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
  • subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Typhi Ty2]gi|16763331|ref|NP_458948.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Typhi str. CT18]gi|2 [nrdb_11152004_Chlamydomonas]
  • subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Typhi Ty2] [nr-271106-contam.fasta]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
    Length: 462 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGKLPEGW VTTHLSEICS KPQYGYTTKS SSMGDVKFLR TTDITKGAVD WSSVPYCMDA  60
   61 PEDVSKYQLQ DRDIVISRAG SVGFSFLVQN PPSQVVFASY LIRFKPVNYF SEYYLKRFLE 120
  121 SSDYWNQLSL MSAGNAVQNV NAQKLSTLTV PIPPIAEQKI IAEKLDTLLA QVDSTKARLE 180
  181 QIPQILKRFR QAVLAAAVSG LLIGSNKRNH HPLCSEWQWP DLPSTWSVHK YSELVDSRLG 240
  241 KMLDKAKNFG SATKYLGNIN VRWFSFDLEN LQDILISDIE RRELSLKLGD VLICEGGEPG 300
  301 RCAIWSEPQD IPVIFQKALH RARVKDKIIP EWLVYNLKND SNNISLSQLF TGTTIKHLTG 360
  361 KALANYPIRV PPLEEQHEIV RRVEQLFAWA DTIEKQVNNA LNRVNSLTQS ILAKAFRGEL 420
  421 TAQWRAENPS LISGENSAAA LLEKIKAERA ASGGKKTSRK KA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..462] PSI-BLAST 54.69897 Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  1.4210145112553 bayes_pls_golite062009
  • DNA binding
    		•  1.41179209561821 bayes_pls_golite062009
  • binding
    		•  1.33040179592624 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.80284978967783 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.63913609426399 bayes_pls_golite062009
  • catalytic activity
    		•  0.316629025709297 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle