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Protein Overview: gi|16761470

General Information:
Name(s) found: gi|16761470 [NCBI NR]
Description(s) found:
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  • gi|16761470|ref|NP_457087.1| DNA-binding transcriptional activator CadC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] [NCBI NR]
  • transcriptional activator CadC [Salmonella enterica subsp. enterica serovar Typhi Ty2]gi|16761470|ref|NP_457087.1| transcriptional activator cadC [Salmonella enterica subsp. enterica serovar Typhi str. CT18]gi|29136458|gb|AAO68024.1| transcriptional act [nrdb_11152004_Chlamydomonas]
  • transcriptional activator cadC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] [nr-271106-contam.fasta]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18
    Length: 514 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQPVVRIGE WLVTPSVNQI SRQGRQITLE PRLIDLLMYF AHHPDEVLSR DNIIDHVWMR  60
   61 TIVTNHVVTQ SISELRKSLR DGGDSNAEYI VTVPKRGYKL TAPVIWCEEN SDEIDNLSTS 120
  121 PPPPIAATNA EPTEGVPAAA PVPPASLQTP TKKAKKPRIA AFWTWVMFLL SLATLVVFIV 180
  181 MSVVDHNAAV TKTRLLLNPR DIDVRFEGGN SCNNWVSQES YAIGLGGLIT DLLNTYSTFM 240
  241 VHDKTNYRVN EPSNSGKTLT IQFVNQRHYR AQQCFMSVVL IDNADGSTML DKRYFVTNTN 300
  301 QLSIQDDLFN SLSFVLTQPW PNRMREQLAL FRTPQNTALM RFYEARQLIL SGDAQALSKA 360
  361 GDILNGIIKE TPDFNYAYEY KVLVDVLRQS QQPFDKEQVA ALNEEFKKID QIPGVEKTSV 420
  421 YYKIKTVDLL GKGDIDAAYE EINKSIELEM SWFNYVLLGK VYEMKGENRL AADAYLTAFN 480
  481 LRPGENTLYW IENGVFQTSV QKIVPYLNSF LAED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] PSI-BLAST 29.0 No description for 2oqrA was found.
    2 View Details [104..197] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [198..514] PSI-BLAST 25.69897 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.38012107359817 bayes_pls_golite062009
  • protein binding
    		•  0.90942498397011 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.802322336220332 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.41617031570549 bayes_pls_golite062009
  • DNA binding
    		•  0.29647638972446 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle