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Protein Overview: gi|29142354, gi|...

General Information:
Name(s) found: gi|29142354 [NCBI NR]
gi|29137984 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|29142354|ref|NP_805696.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR]
  • gi|29137984|gb|AAO69545.1| integrase [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSTLVNAP GRQEGLMANA SYPTGVENHG GSLRIWFLYK GKRVRENLGI PDTAKNRKIA  60
   61 GELRSSVCFA IRMGNFNYVE KFPNSTNLAR FGQDRKEITV LELTERWSEL KRMEISSNTM 120
  121 SRYESIIKNM LPLIGENKMV SAVTTEDLLY VRKELLTGFQ VMKKDHRTQV KGRKSSTVNN 180
  181 YMMLMAEIFQ FGTDNGYAKE NPFSGINRLK KAKGEPDPLT TDEFIRFIQA CGHQQMRNLW 240
  241 SLAVYTGMRH GELCGLAWED IDLHAGTIIV KRNLTQTDEF TLPKTDAGTD RVIYLIQPAI 300
  301 DALRNQAQLT RLGRQFEVEV KLREYGQSVI QPCTFVFSPQ CVKRGPRTGY HYAVNSINKI 360
  361 WAPIIKRAGI RYRNAYQSRH TYACWSLSAG ANPNFIATQM GHTDAQMVYK VYGKWMSEKS 420
  421 AEQVSLLNQA LSRYAPSLPQ SMVAAQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] MSA 5.768993 View MSA. Confident ab initio structure predictions are available.
    2 View Details [94..446] PSI-BLAST 43.522879 SITE-SPECIFIC RECOMBINASE, XERD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • site-specific recombinase activity
    		•  4.99325011803106 bayes_pls_golite062009
  • integrase activity
    		•  3.60695091575172 bayes_pls_golite062009
  • catalytic activity
    		•  2.22520758916604 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.11292854906722 bayes_pls_golite062009
  • DNA binding
    		•  0.10970863758177 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.06580979261817 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle