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Protein Overview: EG10858

General Information:
Name(s) found: rnd / EG10858 [EcoGene]
Description(s) found:
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  • gi|1788105|gb|AAC74874.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655] [NCBI NR]
  • gi|16129758|ref|NP_416318.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655] [NCBI NR]
  • ribonuclease D / RNase D, processes tRNA precursors [EcoGene]
  • Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1 [Swiss-Prot]
  • RNase D, processes tRNA precursor [Escherichia coli K12]gi|1788105|gb|AAC74874.1| RNase D, processes tRNA precursor [Escherichia coli K12]gi|581215|emb|CAA30098.1| unnamed protein product [Escherichia coli]gi|67284|pir||NRECD ribonuclease III (EC 3.1.2 [nrdb_11152004_Chlamydomonas]
  • RNase D [Escherichia coli K12] [wormpep130-phg-ecoli-orf-rand.fasta]
  • RNase D, processes tRNA precursor [Escherichia coli K12] [WormBase_C-elegans_na_01-20-2005_combined_reversed.fasta]
  • ribonuclease D [Escherichia coli str. K-12 substr. MG1655] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • ribonuclease D [Escherichia coli K12]| [wormORF-contam.fasta]
  • Ribonuclease D (RNase D) [nr-271106-contam.fasta]
  • Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=3 SV=2 [2016-04-rabbit-yeast-cow-ecoli-ScORC-Arps-WASPs.fasta]
    • Organism: Escherichia coli K-12
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYQMITTDD ALASLCEAVR AFPAIALDTE FVRTRTYYPQ LGLIQLFDGE HLALIDPLGI  60
   61 TDWSPLKAIL RDPSITKFLH AGSEDLEVFL NVFGELPQPL IDTQILAAFC GRPMSWGFAS 120
  121 MVEEYSGVTL DKSESRTDWL ARPLTERQCE YAAADVWYLL PITAKLMVET EASGWLPAAL 180
  181 DECRLMQMRR QEVVAPEDAW RDITNAWQLR TRQLACLQLL ADWRLRKARE RDLAVNFVVR 240
  241 EEHLWSVARY MPGSLGELDS LGLSGSEIRF HGKTLLALVE KAQTLPEDAL PQPMLNLMDM 300
  301 PGYRKAFKAI KSLITDVSET HKISAELLAS RRQINQLLNW HWKLKPQNNL PELISGWRGE 360
  361 LMAEALHNLL QEYPQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..375] PSI-BLAST 72.69897 Crystal Structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nuclease activity
    		•  1.81796593394339 bayes_pls_golite062009
  • catalytic activity
    		•  1.62277843225829 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.27595421503132 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.16743612214699 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.98004554864099 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.882777779661113 bayes_pls_golite062009
  • hydrolase activity
    		•  0.65819530527327 bayes_pls_golite062009
  • endoribonuclease activity
    		•  0.424230530060369 bayes_pls_golite062009
  • exonuclease activity
    		•  0.39213900591465 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.18010377435387 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.16778637702032 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.16778637702032 bayes_pls_golite062009
  • endonuclease activity
    		•  0.150927275899469 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.10987870963351 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle