YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: EG13940

General Information:
Name(s) found: pdxY / EG13940 [EcoGene]
Description(s) found:
Found 12 descriptions.
SHOW ALL
  • pyridoxamine kinase / Pyridoxamine kinase [EcoGene]
    • Organism: Escherichia coli K-12
    Length: 287 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKNILAIQS HVVYGHAGNS AAEFPMRRLG ANVWPLNTVQ FSNHTQYGKW TGCVMPPSHL  60
   61 TEIVQGIAAI DKLHTCDAVL SGYLGSAEQG EHILGIVRQV KAANPQAKYF CDPVMGHPEK 120
  121 GCIVAPGVAE FHVRHGLPAS DIIAPNLVEL EILCEHAVNN VEEAVLAARE LIAQGPQIVL 180
  181 VKHLARAGYS RDRFEMLLVT ADEAWHISRP LVDFGMRQPV GVGDVTSGLL LVKLLQGATL 240
  241 QEALEHVTAA VYEIMVTTKA MQEYELQVVA AQDRIAKPEH YFSATKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..287] PSI-BLAST 58.522879 Crystal Structure of the PdxY Protein from Escherichia coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • lithium ion binding
    		•  3.00550221878163 bayes_pls_golite062009
  • pyridoxal kinase activity
    		•  2.62798458074822 bayes_pls_golite062009
  • kinase activity
    		•  2.44230326483029 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.43969902311075 bayes_pls_golite062009
  • transferase activity
    		•  2.15883296431019 bayes_pls_golite062009
  • phosphomethylpyrimidine kinase activity
    		•  2.12104666683074 bayes_pls_golite062009
  • sodium ion binding
    		•  1.88404806163148 bayes_pls_golite062009
  • catalytic activity
    		•  1.74474587246986 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  1.32862180479506 bayes_pls_golite062009
  • binding
    		•  1.27381021020647 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.23363144435362 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.21529398967164 bayes_pls_golite062009
  • alkali metal ion binding
    		•  1.18018952731159 bayes_pls_golite062009
  • potassium ion binding
    		•  1.18018952731159 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.01768986812996 bayes_pls_golite062009
  • DNA binding
    		•  0.954497955488766 bayes_pls_golite062009
  • pyridoxal binding
    		•  0.652502098540269 bayes_pls_golite062009
  • transcription factor activity
    		•  0.376784274163604 bayes_pls_golite062009
  • protein binding
    		•  0.140211399655759 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle