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Protein Overview: VRN1_ARATH

General Information:
Name(s) found: VRN1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|89000959|gb|ABD59069.1| At3g18990 [Arabidopsis thaliana] [NCBI NR]
  • gi|75153628|sp|Q8L3W1.1|VRN1_ARATH RecName: Full=B3 domain-containing transcription factor VRN1; AltName: Full=Protein VERNALIZATION 1 [NCBI NR]
  • gi|30685150|ref|NP_188529.2| VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor [Arabidopsis thaliana] [NCBI NR]
  • gi|225898655|dbj|BAH30458.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21734796|gb|AAM76973.1|AF289052_1 reduced vernalization response 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|21734794|gb|AAM76972.1|AF289051_1 reduced vernalization response 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|110741272|dbj|BAF02186.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1 [Swiss-Prot]
  • reduced vernalization response 1 [Arabidopsis thaliana]gi|21734794|gb|AAM76972.1| reduced vernalization response 1 [Arabidopsis thaliana]gi|30685150|ref|NP_188529.2| transcriptional factor B3 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcriptional factor B3 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: REM39, VRN1 | VRN1 (REDUCED VERNALIZATION RESPONSE 1) | chr3:6549083-6551574 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g18990 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • reduced vernalization response 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • VRN1 (REDUCED VERNALIZATION RESPONSE 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 341 amino acids

    Gene Ontology:
    Cellular Component: nucleoplasm [IDA]
    Biological Process: vernalization response [IMP]
    Molecular Function: transcription repressor activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW  60
   61 FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSTGLM DSAHNHFKRA 120
  121 RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP 180
  181 KKRGRKKKNA DPEEINSSAP RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT 240
  241 NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS 300
  301 QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] PSI-BLAST 17.0 Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1
    2 View Details [123..216] deduced N/A No confident structure predictions are available.
    3 View Details [217..341] PSI-BLAST 20.221849 Solution Structure of the B3 DNA-Binding Domain of RAV1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle