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Protein Overview: PRPB_BACSU

General Information:
Name(s) found: PRPB_BACSU [Swiss-Prot]
Description(s) found:
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  • gi|2634846|emb|CAB14343.1| 2-methylisocitrate lyase [Bacillus subtilis subsp. subtilis str. 168] [NCBI NR]
  • gi|221310332|ref|ZP_03592179.1| hypothetical protein Bsubs1_13226 [Bacillus subtilis subsp. subtilis str. 168] [NCBI NR]
  • gi|16079468|ref|NP_390292.1| hypothetical protein BSU24120 [Bacillus subtilis subsp. subtilis str. 168] [NCBI NR]
  • 2-methylisocitrate lyase OS=Bacillus subtilis (strain 168) GN=prpB PE=3 SV=1 [Swiss-Prot]
  • hypothetical protein BSU24120 [Bacillus subtilis subsp. subtilis str. 168]gi|2634846|emb|CAB14343.1| yqiQ [Bacillus subtilis subsp. subtilis str. 168]gi|7449679|pir||G69961 phosphoenolpyruvate mutase homolog yqiQ - Bacillus subtilisgi|1303936|dbj|BAA12 [nrdb_11152004_Chlamydomonas]
  • hypothetical protein BSU24120 [Bacillus subtilis subsp. subtilis str. 168] [nr-271106-contam.fasta]
  • yqiQ [Bacillus subtilis subsp. subtilis str. 168] [nr-271106-contam.fasta]
    • Organism: Bacillus subtilis subsp. subtilis str. 168
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWIVNKQSS QEELAGRFRK LMSAPDILQI PGAHDGMAAL LAKEAGFSAI YLSGAAYTAS  60
   61 RGLPDLGIIT SAEIAERAKD LVRAADLPLL VDIDTGFGGV LNAARTAREM LEARVAAVQM 120
  121 EDQQLPKKCG HLNGKQLVPI KEMAQKIKAI KQAAPSLIVV ARTDARAQEG LDAAIKRSEA 180
  181 YIEAGADAIF PEALQAENEF RQFAERIPVP LLANMTEFGK TPYYRADEFE DMGFHMVIYP 240
  241 VTSLRAAAKA CERMFGLMKE HGSQKEGLHD MQTRKELYDT ISYYDYEALD KTIAKTVLPD 300
  301 E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..301] PSI-BLAST 70.0 2-methylisocitrate lyase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.96882793316847 bayes_pls_golite062009
  • methylisocitrate lyase activity
    		•  2.09739770469711 bayes_pls_golite062009
  • citrate (pro-3S)-lyase activity
    		•  0.86095690814621 bayes_pls_golite062009
  • lyase activity
    		•  0.70986506551964 bayes_pls_golite062009
  • transferase activity
    		•  0.5687068385416 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.404868472347919 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.36217387205482 bayes_pls_golite062009
  • carboxyvinyl-carboxyphosphonate phosphorylmutase activity
    		•  0.2132734143313 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle