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View Structure Prediction Details

Protein: PRPB_BACSU
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 301 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRPB_BACSU.

Description E-value Query
Range
Subject
Range
gi|86164789, gi|... - gi|87120087|ref|ZP_01075983.1| putative methylisocitrate lyase [Marinomonas sp. MED121], gi|86164789...
281.0 [0..5] [296..1]

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Predicted Domain #1
Region A:
Residues: [1-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWIVNKQSS QEELAGRFRK LMSAPDILQI PGAHDGMAAL LAKEAGFSAI YLSGAAYTAS  60
   61 RGLPDLGIIT SAEIAERAKD LVRAADLPLL VDIDTGFGGV LNAARTAREM LEARVAAVQM 120
  121 EDQQLPKKCG HLNGKQLVPI KEMAQKIKAI KQAAPSLIVV ARTDARAQEG LDAAIKRSEA 180
  181 YIEAGADAIF PEALQAENEF RQFAERIPVP LLANMTEFGK TPYYRADEFE DMGFHMVIYP 240
  241 VTSLRAAAKA CERMFGLMKE HGSQKEGLHD MQTRKELYDT ISYYDYEALD KTIAKTVLPD 300
  301 E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.0
Match: 1mumA
Description: 2-methylisocitrate lyase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.96882793316847 bayes_pls_golite062009
methylisocitrate lyase activity 2.09739770469711 bayes_pls_golite062009
citrate (pro-3S)-lyase activity 0.86095690814621 bayes_pls_golite062009
lyase activity 0.70986506551964 bayes_pls_golite062009
transferase activity 0.5687068385416 bayes_pls_golite062009
oxo-acid-lyase activity 0.404868472347919 bayes_pls_golite062009
carbon-carbon lyase activity 0.36217387205482 bayes_pls_golite062009
carboxyvinyl-carboxyphosphonate phosphorylmutase activity 0.2132734143313 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle