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Protein Overview: gi|50947937, gi|...

General Information:
Name(s) found: gi|50947937 [NCBI NR]
gi|42761383 [NCBI NR]
Description(s) found:
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  • gi|50947937|ref|XP_483496.1| unknown protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|42761383|dbj|BAD11651.1| unknown protein [Oryza sativa Japonica Group] [NCBI NR]
  • unknown protein [Oryza sativa (japonica cultivar-group)]gi|42761383|dbj|BAD11651.1| unknown protein [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
  • unknown protein [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 573 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTCWSCGE GAVVADPDTG VLVCTSCGRI HDSGSSEFVH QSICTDNGVY DLRASSFVYH  60
   61 QSQSQYRDQK LSNGVVTIAS IAARLGLSPT AADEALAMAK SATGGNLATQ GSAFLPALAS 120
  121 ACAFLVARSH RLPLSLAEAA ETAFCSVASL ADLVSRIASH LSLPPLPSFD YAAALERAVR 180
  181 SSPSLSSAAS ERTEVILSQS RFLLRCASKW SLTTGRFPLP LIAALVAFAA EANGVTSITV 240
  241 EDIARDISAR LHTSLRRYKE LVDALVRVAR ELLPWGADVN AKNLLLNAPV LLRLMEMRSQ 300
  301 SDPSEQFLES FAPDIAGIVQ ACSAVDDDES KYLQVAPQLA SDDLDSNNSG QEGKELENFK 360
  361 ISEECLSSAY QNVLKRLAQL QRLGQVGKGA NRKRQRIGGL ELEPCIDSLD DGWTKDMVLE 420
  421 DVVNIDVGFD VPPPSFAAGM KLQKKRRARI EAAKCRIDAI RKGPVESENK LQAALRNEDA 480
  481 CSPQKPARKK RGKKRIAGSD RAMNGELPIE MPDGPGGEKK RRKGAPSDGI DWEDCIIELL 540
  541 LLHGANEEEI EQGQYRRLLD LHVFCAVSAS GHK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] MSA 3.149993 View MSA. Confident ab initio structure predictions are available.
    2 View Details [63..280] PSI-BLAST 58.221849 Transcription factor IIB (TFIIB), core domain
    3 View Details [281..397] deduced N/A No confident structure predictions are available.
    4 View Details [398..573] PSI-BLAST 12.0 TBP-binding domain of the transcription factor IIIb Brf1 subunit


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.44

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle