Protein: | gi|50947937, gi|... |
Organism: | Oryza sativa Japonica Group |
Length: | 573 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50947937, gi|....
Description | E-value | Query Range |
Subject Range |
|
423.0 | [0..3] | [547..4] |
|
421.0 | [0..3] | [547..4] |
|
419.0 | [0..3] | [547..4] |
|
404.0 | [0..1] | [548..1] |
|
390.0 | [0..2] | [548..3] |
|
383.0 | [0..26] | [547..183] |
Region A: Residues: [1-62] |
1 11 21 31 41 51 | | | | | | 1 MESTCWSCGE GAVVADPDTG VLVCTSCGRI HDSGSSEFVH QSICTDNGVY DLRASSFVYH 60 61 QS |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.895 | N/A | N/A | g.3.19 | Description not found. |
Region A: Residues: [63-280] |
1 11 21 31 41 51 | | | | | | 1 QSQYRDQKLS NGVVTIASIA ARLGLSPTAA DEALAMAKSA TGGNLATQGS AFLPALASAC 60 61 AFLVARSHRL PLSLAEAAET AFCSVASLAD LVSRIASHLS LPPLPSFDYA AALERAVRSS 120 121 PSLSSAASER TEVILSQSRF LLRCASKWSL TTGRFPLPLI AALVAFAAEA NGVTSITVED 180 181 IARDISARLH TSLRRYKELV DALVRVAREL LPWGADVN |
Detection Method: | |
Confidence: | 58.221849 |
Match: | 1c9bA |
Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [281-397] |
1 11 21 31 41 51 | | | | | | 1 AKNLLLNAPV LLRLMEMRSQ SDPSEQFLES FAPDIAGIVQ ACSAVDDDES KYLQVAPQLA 60 61 SDDLDSNNSG QEGKELENFK ISEECLSSAY QNVLKRLAQL QRLGQVGKGA NRKRQRI |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [398-573] |
1 11 21 31 41 51 | | | | | | 1 GGLELEPCID SLDDGWTKDM VLEDVVNIDV GFDVPPPSFA AGMKLQKKRR ARIEAAKCRI 60 61 DAIRKGPVES ENKLQAALRN EDACSPQKPA RKKRGKKRIA GSDRAMNGEL PIEMPDGPGG 120 121 EKKRRKGAPS DGIDWEDCII ELLLLHGANE EEIEQGQYRR LLDLHVFCAV SASGHK |
Detection Method: | |
Confidence: | 12.0 |
Match: | 1ngmB |
Description: | TBP-binding domain of the transcription factor IIIb Brf1 subunit |
Matching Structure (courtesy of the PDB): |