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Protein Overview: gi|215740556, gi...

General Information:
Name(s) found: gi|50947725 [NCBI NR]
gi|42407725 [NCBI NR]
gi|42407330 [NCBI NR]
gi|215740556 [NCBI NR]
gi|115477372 [NCBI NR]
gi|113624251 [NCBI NR]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • gi|50947725|ref|XP_483390.1| DnaJ protein family-like [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|42407725|dbj|BAD08872.1| DnaJ protein family-like [Oryza sativa Japonica Group] [NCBI NR]
  • gi|42407330|dbj|BAD08769.1| DnaJ protein family-like [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215740556|dbj|BAG97212.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115477372|ref|NP_001062282.1| Os08g0522600 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113624251|dbj|BAF24196.1| Os08g0522600 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 394 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKETGYYDV LGVSPTATES EIKKAYYMKA RQVHPDKNPN DPKAAENFQA LGEAYQVLSD  60
   61 PTQRQAYDAH GKSGISTEGI IDPAAIFAML FGSELFEDYI GQLAMASMAS LDNFGEDEHI 120
  121 DTRRLHERMQ AVQKEREEKL AETLKNRLHI YVQGNKEEFV QLAQAEVTRL SNAAYGTVML 180
  181 NTIGYVYSRQ AAKELGKKAI FLGVPFVAEW FRDKGHFIKS QVTAAAGAIA LMQLQEDLKK 240
  241 YLSAEGHYTE EELEMFMQNH KKVMVDSLWK LNVADIEATL SRVCQMVLQD GSVRREELRA 300
  301 RAKGLKTLGK IFQRVKLNND EGEASDMRNI DNMDDNDGSS PDTSPRREPP YNPIPNPPHA 360
  361 QSPYVEAPQF GGTYYPFNFP MPTAPPGAQR DPIP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] PSI-BLAST 22.69897 NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
    2 View Details [110..394] PSI-BLAST 25.69897 The crystal structure of Hsp40 Ydj1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  3.04403163860617 bayes_pls_golite062009
  • heat shock protein binding
    		•  2.17994194200939 bayes_pls_golite062009
  • binding
    		•  2.03854863870179 bayes_pls_golite062009
  • chaperone binding
    		•  1.61155546076854 bayes_pls_golite062009
  • protein binding
    		•  0.912937133925792 bayes_pls_golite062009
  • Hsp70 protein binding
    		•  0.541755903922701 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.423488346839872 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.146399219759372 bayes_pls_golite062009
  • catalytic activity
    		•  0.106988907594358 bayes_pls_golite062009
  • DNA binding
    		•  0.10307408349439 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.13705208493215 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.04158808514315 bayes_pls_golite062009
  • protein binding
    		•  0.882827615657312 bayes_pls_golite062009
  • protein disulfide isomerase activity
    		•  0.290861970307477 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing S-S bonds
    		•  0.290861970307477 bayes_pls_golite062009
  • catalytic activity
    		•  0.276917867171685 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting keto- and enol-groups
    		•  0.0964866497718595 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle