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Protein Overview: gi|38637407, gi|...

General Information:
Name(s) found: gi|50944161 [NCBI NR]
gi|38637407 [NCBI NR]
gi|222640346 [NCBI NR]
gi|115475892 [NCBI NR]
gi|113623511 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|50944161|ref|XP_481608.1| putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|38637407|dbj|BAD03665.1| putative endoribonuclease E [Oryza sativa Japonica Group] [NCBI NR]
  • gi|222640346|gb|EEE68478.1| hypothetical protein OsJ_26881 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115475892|ref|NP_001061542.1| Os08g0323600 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113623511|dbj|BAF23456.1| Os08g0323600 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1085 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARALGPPP PHALGATRQA PRCPHAAAAD ASAPPTHGYR RGAAALGSAL SARRGRHTLC  60
   61 SVQLMDALRG GNLQVEPNIL HSPKPLMSTR RDDSAITCKG FCTISWNLKS DVLDGYIIFV 120
  121 TGDPVTLGCW ESDMAVQLSP SVESNNLWTA EIKVPYGVHF KYNYFVREEN DASSDIIWRP 180
  181 GPEYSLSIPP VGRKKHVIVV KDLWMKTSVA GIPTPSWGSW LMEANFLEDQ FAKSGEHQNI 240
  241 VKAHSVIDTV DRASSVGEHI ILRLGNGTPL HVKNISENPS ASVHDDFTVT DKANSIKSSI 300
  301 SEHERNQPVE EPWILGSVMA AKKSVAAGKH EKNRWKFVNK KQNLSEVSEN IPEQDQPVEE 360
  361 PWLFQSKVVA KKPVVQTKGK IEAKDIIRKL RKMDKPPAPL EEDKATSGEP SSRVIVINSS 420
  421 VCTMQRIAVL EDGKLVELLL EPIKNNVQCD SIYLGIVTKL VPHMGGAFVD IGLSRPSLMS 480
  481 IKQNRDPFVY PQIVKNAKRD SANFSDYNDD SLPTYEDEDD DMTDGELADE ENDDESSAFP 540
  541 AEVVSENEEH MAFLPNSKIN MIHSAEFESI SSYDEEKDDE IDDHMEDEYN EDLLPGDQSE 600
  601 VSNDLKTLSS IQHALRESSD DTNGSRWSQV RKGTKIMVQV VKEGLGSKGP TLSPFPCLRS 660
  661 RFWILVSRGN KVGVSKKITG IERTRLKGIT KLLRPPGFTL TARTVAAGHS WEELQKDLDR 720
  721 LLSTWKGIIE HAQSAALAAE EGVEGAVPVM LHRSKGQALS VVQDDFNEKV KRLVVDSPRT 780
  781 YHEVTNYLQE VAPELCNRVD LYEKRTPIFD EYKIEKEIDN ILCKRVPLHN GGSLVIEQTE 840
  841 ALVSIDVNGG HSMFGQGTSQ EKAILEVNLE AAKQIARELR LRDIGGIIVV DFIDMTDDTN 900
  901 KKLVFEEMKK AVEKDRSTVG VSELSKLGLM EITRKRVRPS VTFMISEPCP CCHGIGRVEA 960
  961 LDTSFSKIER EICRRLAASG HKSDPEKPKS WPRFVLRVDH EMCTYLTSGK KTKLGLLSSS1020
 1021 LKVWILLKIA RGFARGAFEL LPYSDEKETD ERKEETSESP PKEAGSPKLS VFPIKKWMSR1080
 1081 AKRAK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..206] PSI-BLAST 45.221849 Bacillus circulans strain 251 loop mutant 183-195
    2 View Details [207..544] PSI-BLAST 11.69897 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    3 View Details [545..1085] PSI-BLAST 173.0 No description for 2vmkA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle