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View Structure Prediction Details

Protein: gi|38637407, gi|...
Organism: Oryza sativa Japonica Group
Length: 1085 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|38637407, gi|....

Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARALGPPP PHALGATRQA PRCPHAAAAD ASAPPTHGYR RGAAALGSAL SARRGRHTLC  60
   61 SVQLMDALRG GNLQVEPNIL HSPKPLMSTR RDDSAITCKG FCTISWNLKS DVLDGYIIFV 120
  121 TGDPVTLGCW ESDMAVQLSP SVESNNLWTA EIKVPYGVHF KYNYFVREEN DASSDIIWRP 180
  181 GPEYSLSIPP VGRKKHVIVV KDLWMK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.221849
Match: 1pj9A
Description: Bacillus circulans strain 251 loop mutant 183-195
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [207-544]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSVAGIPTPS WGSWLMEANF LEDQFAKSGE HQNIVKAHSV IDTVDRASSV GEHIILRLGN  60
   61 GTPLHVKNIS ENPSASVHDD FTVTDKANSI KSSISEHERN QPVEEPWILG SVMAAKKSVA 120
  121 AGKHEKNRWK FVNKKQNLSE VSENIPEQDQ PVEEPWLFQS KVVAKKPVVQ TKGKIEAKDI 180
  181 IRKLRKMDKP PAPLEEDKAT SGEPSSRVIV INSSVCTMQR IAVLEDGKLV ELLLEPIKNN 240
  241 VQCDSIYLGI VTKLVPHMGG AFVDIGLSRP SLMSIKQNRD PFVYPQIVKN AKRDSANFSD 300
  301 YNDDSLPTYE DEDDDMTDGE LADEENDDES SAFPAEVV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 1e3hA
Description: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [545-1085]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SENEEHMAFL PNSKINMIHS AEFESISSYD EEKDDEIDDH MEDEYNEDLL PGDQSEVSND  60
   61 LKTLSSIQHA LRESSDDTNG SRWSQVRKGT KIMVQVVKEG LGSKGPTLSP FPCLRSRFWI 120
  121 LVSRGNKVGV SKKITGIERT RLKGITKLLR PPGFTLTART VAAGHSWEEL QKDLDRLLST 180
  181 WKGIIEHAQS AALAAEEGVE GAVPVMLHRS KGQALSVVQD DFNEKVKRLV VDSPRTYHEV 240
  241 TNYLQEVAPE LCNRVDLYEK RTPIFDEYKI EKEIDNILCK RVPLHNGGSL VIEQTEALVS 300
  301 IDVNGGHSMF GQGTSQEKAI LEVNLEAAKQ IARELRLRDI GGIIVVDFID MTDDTNKKLV 360
  361 FEEMKKAVEK DRSTVGVSEL SKLGLMEITR KRVRPSVTFM ISEPCPCCHG IGRVEALDTS 420
  421 FSKIEREICR RLAASGHKSD PEKPKSWPRF VLRVDHEMCT YLTSGKKTKL GLLSSSLKVW 480
  481 ILLKIARGFA RGAFELLPYS DEKETDERKE ETSESPPKEA GSPKLSVFPI KKWMSRAKRA 540
  541 K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 173.0
Match: 2vmkA
Description: No description for 2vmkA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle