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Protein Overview: gi|50930473, gi|...

General Information:
Name(s) found: gi|50930473 [NCBI NR]
gi|38345984 [NCBI NR]
Description(s) found:
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  • gi|50930473|ref|XP_474764.1| OSJNBb0033G08.12 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|38345984|emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • OSJNBb0033G08.12 [Oryza sativa (japonica cultivar-group)]gi|38345984|emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
  • OSJNBb0033G08.12 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 1847 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAMEQERR EAKSRASALP GQRRLRRRVQ GEDYLPKEDD FALASSPPQR PKKPFRPIKP  60
   61 RVNRVDDRQT AHQGPMSPYI IMYPCKCPFH KAGAVRGDLR AKPLRANATE EGREGEGCKA 120
  121 EGKQRRTGHG RQGGSRAFGA SGRRWRRTIC FHTCAITNAF GPCRLCASAE RGRRGEGGCG 180
  181 GKGTPDQGGD PFDKPTGGAP SRSIAAGSSL DYARRCAGPK QQQAYEAARR TKVTSAPILQ 240
  241 YSAGYVPPQV HPQVMTQPFP PQVAQAPMYF AGQQSAAVAA QVHHQPPSQA PQIVAEGASA 300
  301 LQAQLQAFLQ QLNQPHCISS TTPSAHPEGN TSQGAPNWLP PIQPGLGVSL WNQGPQFDFV 360
  361 NAAQAPTVRQ QAPTPGFRTN QAPIQVAMTW SQPIFDPSMA AQQQGAVNRA GGEKGLPLSG 420
  421 GIKTRPIPPQ FKFPPVPRYS GETDPKEFLS IYESAIEAAH GDENTKAKVI HLALDGIARS 480
  481 WYFNLPANSI YSWEQLRDVF VLNFRGTYKE PKTQQHLLGI RQKQGESIRE YMRRFSQARC 540
  541 QVQDITKASV INAASAGLLE GELTRKIANK EPQTLEHLLR IIDGFARGEE DSKRRQAIQV 600
  601 EYDKASVAAA QAQAQVQVAE PPPLFVRQSQ PAIQGQPPRQ GQAPITWRKF RTDRAGKAVM 660
  661 AVVEVQALRK EFDAEKASNH QQPARKRSEK TSTAPFTNAL RTPRNNAETL GNVATRKTQG 720
  721 RSREQLSKHP AKQFRSKHPQ LNNAKMYSEG ITSAGKGAPQ YLNQLISFGP EDAEEVMFPH 780
  781 QDPLVISAEI AGFEVRRILV DGGSSADVIF AEAYAKIGLP TQALTPAPAS LRGFGGEAVQ 840
  841 VLGQALLLIA FGSGENRREE QILFDVVDIP YNYNAIFGRA TLNKFEAIFH HNYLKLKMPG 900
  901 PTGVIVVKGL QRSAASKGDL AIINRAVHSV ETEPHERLKH TPKPTPHGKI TKVQIDDADP 960
  961 TKLVSLGGDM GEEEVESILE VLKKNIDIFA WSPDEVGGVP ADLIMHHLAV KPDIKPRKQK1020
 1021 LRKMSADRQE AAKAEVQKLL RAGVMQEIDH PEWLANPVLD AFRLEERRSN FRRLVYKVLG1080
 1081 KQLGRNVEAY VDDIVVKSRK AFDHAIDLQE TFDSLRTAGI RLNPEKCVFG VRAGKLLGFL1140
 1141 VSERGIEANP EKIDAIQQMK PPSSVHEVQK LAGRIAALSR FLSKAPERGL PFFKTLRGAG1200
 1201 KFNWTPECQA AFDELKQYLQ STPALISTPP GSELLLYLAA SPVAVSAALV QETEFGQKPV1260
 1261 YFVSEALQGA KTRYIEMEKL AYALVMASRK LKHYFQAHKV IVPSQYPLGE ILRGKEITGR1320
 1321 LSKWAAELSP FNLHFVARSA IKSQVLANFV AEWTPVLAPD PEPAEQFWVM CSDGSWSHKG1380
 1381 AGIAAVLFSP NGVPIWYAAR LQFDTTNNAA EYEAVLLGLR KAKALGVRRL LIRTDSKLVV1440
 1441 GHVNKSFEAK EEGMKRHLEA IRSMEKCFTG ITVEHLPRDQ NEEADALAKS AACGGPHSPS1500
 1501 IFFEVLHAPS VPMDSSEVMA IDQEKLGEDP YDWRTPFVKH LETGWLPVDE AEAKRLQLRA1560
 1561 MKYKMVSGQL YRSGVLQPLL RCISFAEGEE MAKEIHQGLC GVHQAARTVA SKQYRSLYGK1620
 1621 NIVCRFGVPK EFITDNAKQF DSDKFREMCE GLNLEIRFAS VAHPQSNGAA ERTNGKMLEA1680
 1681 LKKRLEGAAK GKWPEELLSV LWALRTTPTR PTKFSLFMLL YGDEAMTPAE LGANSPRVMF1740
 1741 SGGEEGCEVS LELLEGVRVE ALEHMHKYTT STSSTYNKKV RPMELMPGHL VLRKKANPVA1800
 1801 VGKLESKWEG PYLIKHKSRT GYFRLSTLKG EEFDHSWNAA SLKCFYV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..235] deduced N/A No confident structure predictions are available.
    2 View Details [236..510] PSI-BLAST 39.154902 HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein
    3 View Details [511..627] PSI-BLAST 32.69897 No description for 3dikA was found.
    4 View Details [628..761] deduced N/A No confident structure predictions are available.
    5 View Details [762..887] PSI-BLAST 25.0 CRYSTAL STRUCTURE OF A TETHERED DIMER OF HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR
    6 View Details [888..1513] PSI-BLAST 169.0 No description for 2rf2A was found.
    7 View Details [1514..1847] PSI-BLAST 71.0 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle