| Protein: | gi|50930473, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1847 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for gi|50930473, gi|....
|
Region A: Residues: [1-235] |
1 11 21 31 41 51
| | | | | |
1 MAKAMEQERR EAKSRASALP GQRRLRRRVQ GEDYLPKEDD FALASSPPQR PKKPFRPIKP 60
61 RVNRVDDRQT AHQGPMSPYI IMYPCKCPFH KAGAVRGDLR AKPLRANATE EGREGEGCKA 120
121 EGKQRRTGHG RQGGSRAFGA SGRRWRRTIC FHTCAITNAF GPCRLCASAE RGRRGEGGCG 180
181 GKGTPDQGGD PFDKPTGGAP SRSIAAGSSL DYARRCAGPK QQQAYEAARR TKVTS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [236-510] |
1 11 21 31 41 51
| | | | | |
1 APILQYSAGY VPPQVHPQVM TQPFPPQVAQ APMYFAGQQS AAVAAQVHHQ PPSQAPQIVA 60
61 EGASALQAQL QAFLQQLNQP HCISSTTPSA HPEGNTSQGA PNWLPPIQPG LGVSLWNQGP 120
121 QFDFVNAAQA PTVRQQAPTP GFRTNQAPIQ VAMTWSQPIF DPSMAAQQQG AVNRAGGEKG 180
181 LPLSGGIKTR PIPPQFKFPP VPRYSGETDP KEFLSIYESA IEAAHGDENT KAKVIHLALD 240
241 GIARSWYFNL PANSIYSWEQ LRDVFVLNFR GTYKE
|
| Detection Method: | |
| Confidence: | 39.154902 |
| Match: | 1l6nA |
| Description: | HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [511-627] |
1 11 21 31 41 51
| | | | | |
1 PKTQQHLLGI RQKQGESIRE YMRRFSQARC QVQDITKASV INAASAGLLE GELTRKIANK 60
61 EPQTLEHLLR IIDGFARGEE DSKRRQAIQV EYDKASVAAA QAQAQVQVAE PPPLFVR
|
| Detection Method: | |
| Confidence: | 32.69897 |
| Match: | 3dikA |
| Description: | No description for 3dikA was found. |
|
Region A: Residues: [628-761] |
1 11 21 31 41 51
| | | | | |
1 QSQPAIQGQP PRQGQAPITW RKFRTDRAGK AVMAVVEVQA LRKEFDAEKA SNHQQPARKR 60
61 SEKTSTAPFT NALRTPRNNA ETLGNVATRK TQGRSREQLS KHPAKQFRSK HPQLNNAKMY 120
121 SEGITSAGKG APQY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [762-887] |
1 11 21 31 41 51
| | | | | |
1 LNQLISFGPE DAEEVMFPHQ DPLVISAEIA GFEVRRILVD GGSSADVIFA EAYAKIGLPT 60
61 QALTPAPASL RGFGGEAVQV LGQALLLIAF GSGENRREEQ ILFDVVDIPY NYNAIFGRAT 120
121 LNKFEA
|
| Detection Method: | |
| Confidence: | 25.0 |
| Match: | 1hvcA |
| Description: | CRYSTAL STRUCTURE OF A TETHERED DIMER OF HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [888-1513] |
1 11 21 31 41 51
| | | | | |
1 IFHHNYLKLK MPGPTGVIVV KGLQRSAASK GDLAIINRAV HSVETEPHER LKHTPKPTPH 60
61 GKITKVQIDD ADPTKLVSLG GDMGEEEVES ILEVLKKNID IFAWSPDEVG GVPADLIMHH 120
121 LAVKPDIKPR KQKLRKMSAD RQEAAKAEVQ KLLRAGVMQE IDHPEWLANP VLDAFRLEER 180
181 RSNFRRLVYK VLGKQLGRNV EAYVDDIVVK SRKAFDHAID LQETFDSLRT AGIRLNPEKC 240
241 VFGVRAGKLL GFLVSERGIE ANPEKIDAIQ QMKPPSSVHE VQKLAGRIAA LSRFLSKAPE 300
301 RGLPFFKTLR GAGKFNWTPE CQAAFDELKQ YLQSTPALIS TPPGSELLLY LAASPVAVSA 360
361 ALVQETEFGQ KPVYFVSEAL QGAKTRYIEM EKLAYALVMA SRKLKHYFQA HKVIVPSQYP 420
421 LGEILRGKEI TGRLSKWAAE LSPFNLHFVA RSAIKSQVLA NFVAEWTPVL APDPEPAEQF 480
481 WVMCSDGSWS HKGAGIAAVL FSPNGVPIWY AARLQFDTTN NAAEYEAVLL GLRKAKALGV 540
541 RRLLIRTDSK LVVGHVNKSF EAKEEGMKRH LEAIRSMEKC FTGITVEHLP RDQNEEADAL 600
601 AKSAACGGPH SPSIFFEVLH APSVPM
|
| Detection Method: | |
| Confidence: | 169.0 |
| Match: | 2rf2A |
| Description: | No description for 2rf2A was found. |
|
Region A: Residues: [1514-1847] |
1 11 21 31 41 51
| | | | | |
1 DSSEVMAIDQ EKLGEDPYDW RTPFVKHLET GWLPVDEAEA KRLQLRAMKY KMVSGQLYRS 60
61 GVLQPLLRCI SFAEGEEMAK EIHQGLCGVH QAARTVASKQ YRSLYGKNIV CRFGVPKEFI 120
121 TDNAKQFDSD KFREMCEGLN LEIRFASVAH PQSNGAAERT NGKMLEALKK RLEGAAKGKW 180
181 PEELLSVLWA LRTTPTRPTK FSLFMLLYGD EAMTPAELGA NSPRVMFSGG EEGCEVSLEL 240
241 LEGVRVEALE HMHKYTTSTS STYNKKVRPM ELMPGHLVLR KKANPVAVGK LESKWEGPYL 300
301 IKHKSRTGYF RLSTLKGEEF DHSWNAASLK CFYV
|
| Detection Method: | |
| Confidence: | 71.0 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
