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Protein Overview: gi|9658377, gi|1...

General Information:
Name(s) found: gi|9658377 [NCBI NR]
gi|15601693 [NCBI NR]
Description(s) found:
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  • gi|9658377|gb|AAF96836.1| transcriptional regulator, DeoR family [Vibrio cholerae O1 biovar eltor str. N16961] [NCBI NR]
  • gi|15601693|ref|NP_233324.1| DeoR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] [NCBI NR]
  • transcriptional regulator, DeoR family [Vibrio cholerae O1 biovar eltor str. N16961]gi|15601693|ref|NP_233324.1| transcriptional regulator, DeoR family [Vibrio cholerae O1 biovar eltor str. N16961]gi|11356241|pir||C82397 transcription regulator DeoR fam [nrdb_11152004_Chlamydomonas]
  • transcriptional regulator, DeoR family [Vibrio cholerae O1 biovar eltor str. N16961] [nr-271106-contam.fasta]
    • Organism: Vibrio cholerae O1 biovar El Tor str. N16961
    Length: 253 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVKRHQEI IELVQAQGFV STEELVERFD VSPQTIRRDL NELAEANKLR RNHGGATIAT  60
   61 SSENSSYHTR QVSYQNEKEK VAMALVQHIP DGATLFIDIG TTPEAIARAL MVNHHQLRVV 120
  121 TNNLNVATML MSKPDFSIIL AGGEVRNKDG GVTGEATLDF ISQFRLDFGI LGISGIDYDG 180
  181 SLLDFDYHEV RVKRAIIENS RSVFLAVDHS KFGRNAMVKL GTLADVDLVI TDQTPPKEIE 240
  241 AFAKENEVTI QVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..63] PSI-BLAST 6.30103 No description for 2p5vA was found.
    2 View Details [64..253] PSI-BLAST 17.221849 D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  0.965520574888216 bayes_pls_golite062009
  • catalytic activity
    		•  0.795398981330566 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.769423781192988 bayes_pls_golite062009
  • DNA binding
    		•  0.223734115868557 bayes_pls_golite062009
  • binding
    		•  0.199466104892993 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle