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Protein Overview: gi|47848462, gi|...

General Information:
Name(s) found: gi|50898756 [NCBI NR]
gi|47848462 [NCBI NR]
gi|215704333 [NCBI NR]
gi|115478080 [NCBI NR]
gi|113630868 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|50898756|ref|XP_450166.1| trithorax-like [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|47848462|dbj|BAD22318.1| trithorax-like [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215704333|dbj|BAG93767.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115478080|ref|NP_001062635.1| Os09g0134500 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113630868|dbj|BAF24549.1| Os09g0134500 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1022 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIAVEGGFV HEEEEVDHPI RYLPLGRVYS SSAPCPLPKK PRSAEDGKPP VIVYYRRRRK  60
   61 KPRVEGPPPS PATAPPMLHP REDDEDEEVT RRKGSLKYEL LSLGQAPPAL GGDGEEPARR 120
  121 RCLRRSGGAE RRGYFSEPKR RQRQGVHKEA ASSAGRRWLE LEIEAADPLA FVGLGCKVFW 180
  181 PLDEDWYKGS ITGYNEATKK HSVKYDDGES EDLNLADERI KFSISSEEMK CRNLKFGISN 240
  241 LNKRGYDELL ALAVSLHDYQ GLDPGDLVWA KLTGHAMWPA VVVDESNVPA NRALKPGRLD 300
  301 QSILVQFFGT HDFARIKLKQ AVPFLNGLLS SLHLKCKQAR FYRSLEEAKE FLCTQLLPEN 360
  361 MLQLQKSMEK GSSDANSNKD VHSCDNLSED KTAESGGDYD EMTPIELGNL RVSKLGRIVT 420
  421 DSDYFHNKKH IWPEGYTAFR KFRSVKDPHV VILYKMEVLR NSDIKARPLF RVTSEDGTQI 480
  481 DGSTPNTCWK EIYCRLKEKQ RNVASGLDRD VCQGSGSYMF GFSNPQIRQL IQELPNARSC 540
  541 LKYFENAGDT FRGYRAVHVN WKDLDYCSVC DMDEEYEDNL FLQCDKCRMM VHARCYGELE 600
  601 PLNGVLWLCN LCRPEAPRVS PRCCLCPVTG GAMKPTTDGR WAHLACAIWI PETCLKDVKR 660
  661 MEPIDGLSRI NKDRWKLLCS ICGVAYGACI QCSHPTCRVA YHPLCARAAD LCVELEDDDK 720
  721 IHLMLLDEDE DPCIRLLSYC KKHRQPSTER PSLESNLAKP AVVVQTDAVP PSGCARTEPY 780
  781 NIHGRRGQKQ PQVMATASVK RLYVENMPYI VSGFCQNRVG HDAISEPIQS VGFLDVAHQE 840
  841 AVGNVSSMIE KYKSMKATFR RRLAFGKSRI HGFGVFAKVS HKAGDMMIEY IGELVRPPIS 900
  901 DIRERRIYNS LVGAGTYMFR IDDERVIDAT RAGSIAHLIN HSCEPNCYSR VISVLGDEHI 960
  961 IIFAKRDINP WEELTYDYRF VSSDQRLPCY CGFPKCRGVV NDVEAEGQSA KIRVNRSELF1020
 1021 QQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] MSA 4.266997 View MSA. No confident structure predictions are available.
    2 View Details [208..376] Pfam 8.677781 No description for PF00855.9 was found. No confident structure predictions are available.
    3 View Details [377..480] Pfam 19.431798 No description for PF05964.6 was found. No confident structure predictions are available.
    4 View Details [481..870] PSI-BLAST 5.154902 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
    5 View Details [871..1022] PSI-BLAST 10.522879 No description for 2o8jA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle