| Protein: | gi|47848462, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1022 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47848462, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
238.0 | [0..5] | [1001..1669] |
|
|
232.0 | [0..10] | [1011..752] |
|
|
232.0 | [0..13] | [1001..826] |
|
|
229.0 | [0..99] | [1021..147] |
|
|
226.0 | [0..1] | [781..1] |
|
|
226.0 | [0..10] | [1011..1112] |
|
Region A: Residues: [1-207] |
1 11 21 31 41 51
| | | | | |
1 MVIAVEGGFV HEEEEVDHPI RYLPLGRVYS SSAPCPLPKK PRSAEDGKPP VIVYYRRRRK 60
61 KPRVEGPPPS PATAPPMLHP REDDEDEEVT RRKGSLKYEL LSLGQAPPAL GGDGEEPARR 120
121 RCLRRSGGAE RRGYFSEPKR RQRQGVHKEA ASSAGRRWLE LEIEAADPLA FVGLGCKVFW 180
181 PLDEDWYKGS ITGYNEATKK HSVKYDD
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [208-376] |
1 11 21 31 41 51
| | | | | |
1 GESEDLNLAD ERIKFSISSE EMKCRNLKFG ISNLNKRGYD ELLALAVSLH DYQGLDPGDL 60
61 VWAKLTGHAM WPAVVVDESN VPANRALKPG RLDQSILVQF FGTHDFARIK LKQAVPFLNG 120
121 LLSSLHLKCK QARFYRSLEE AKEFLCTQLL PENMLQLQKS MEKGSSDAN
|
| Detection Method: | |
| Confidence: | 8.677781 |
| Match: | PF00855.9 |
| Description: | No description for PF00855.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [377-480] |
1 11 21 31 41 51
| | | | | |
1 SNKDVHSCDN LSEDKTAESG GDYDEMTPIE LGNLRVSKLG RIVTDSDYFH NKKHIWPEGY 60
61 TAFRKFRSVK DPHVVILYKM EVLRNSDIKA RPLFRVTSED GTQI
|
| Detection Method: | |
| Confidence: | 19.431798 |
| Match: | PF05964.6 |
| Description: | No description for PF05964.6 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [481-870] |
1 11 21 31 41 51
| | | | | |
1 DGSTPNTCWK EIYCRLKEKQ RNVASGLDRD VCQGSGSYMF GFSNPQIRQL IQELPNARSC 60
61 LKYFENAGDT FRGYRAVHVN WKDLDYCSVC DMDEEYEDNL FLQCDKCRMM VHARCYGELE 120
121 PLNGVLWLCN LCRPEAPRVS PRCCLCPVTG GAMKPTTDGR WAHLACAIWI PETCLKDVKR 180
181 MEPIDGLSRI NKDRWKLLCS ICGVAYGACI QCSHPTCRVA YHPLCARAAD LCVELEDDDK 240
241 IHLMLLDEDE DPCIRLLSYC KKHRQPSTER PSLESNLAKP AVVVQTDAVP PSGCARTEPY 300
301 NIHGRRGQKQ PQVMATASVK RLYVENMPYI VSGFCQNRVG HDAISEPIQS VGFLDVAHQE 360
361 AVGNVSSMIE KYKSMKATFR RRLAFGKSRI
|
| Detection Method: | |
| Confidence: | 5.154902 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [871-1022] |
1 11 21 31 41 51
| | | | | |
1 HGFGVFAKVS HKAGDMMIEY IGELVRPPIS DIRERRIYNS LVGAGTYMFR IDDERVIDAT 60
61 RAGSIAHLIN HSCEPNCYSR VISVLGDEHI IIFAKRDINP WEELTYDYRF VSSDQRLPCY 120
121 CGFPKCRGVV NDVEAEGQSA KIRVNRSELF QQ
|
| Detection Method: | |
| Confidence: | 10.522879 |
| Match: | 2o8jA |
| Description: | No description for 2o8jA was found. |
