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Protein Overview: gi|115483276, gi...

General Information:
Name(s) found: gi|37536642 [NCBI NR]
gi|31433391 [NCBI NR]
gi|13876527 [NCBI NR]
gi|115483276 [NCBI NR]
gi|113639840 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|37536642|ref|NP_922623.1| putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6 -diaminopimelate ligase [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6 -diaminopimelate ligase [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 757 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAPLAFHL PFPFPSASRP PPRLLPPSRR PPAARLAATR RFRPPTADDE PPEAAEDSSH  60
   61 GLNRYDQLTR HVERARRRQQ AEQPEITPDH PLFSSPPSSG EAGSYDPDDE FFDEIDRAIA 120
  121 EKREEFTRRG LIKPSAPAPS QPEEEDGLAD ELSPEEVIDL DEIRRLQGLS VVSLADEEDE 180
  181 EANGGGGGVD YGDDGVPLDD DGEVFDVADE VGLEGARVRY PAFRMTLAEL LDESKLVPVA 240
  241 VTGDQDVALA GVQRDASLVA AGDLYVCVGE EGLAGLTEAD KRGAVAVVAD QTVDIEGTLA 300
  301 CRALVIVDDI TAALRMLPAC LYRRPSKDMA VIGVAGTDGV TTTAHLVRAM YEAMGVRTGM 360
  361 VGVLGAYAFG NNKLDAQPDA SGDPIAVQRL MATMLYNGAE AALLEATTDG MPSSGVDSEI 420
  421 DYDIAVLTNV RHAGDEAGMT YEEYMNSMAS LFSRMVDPER HRKVVNIDDP SAPFFAAQGG 480
  481 QDVPVVTYSF ENKKADVHTL KYQLSLFETE VLVQTPHGIL EISSGLLGRD NIYNILASVA 540
  541 VGVAVGAPLE DIVKGIEEVD AIPGRCELID EEQAFGVIVD HARTPESLSR LLDGVKELGP 600
  601 RRIVTVIGCC GERERGKRPV MTKVAAEKSD VVMLTSDNPA NEDPLDILDD MLAGVGWTME 660
  661 EYLKHGTNDY YPPLPNGHRI FLHDIRRVAV RAAVAMGEQG DVVVITGKGN DTYQIEVDKK 720
  721 EFFDDREECR EALQYVDQLH RAGIDTSEFP WRLPESH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..219] MSA 1.083995 View MSA. No confident structure predictions are available.
    2 View Details [220..757] PSI-BLAST 97.0 UDP-N-acetylmuramyl tripeptide synthetase MurE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • acid-amino acid ligase activity
    		•  4.3848849271737 bayes_pls_golite062009
  • UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
    		•  3.04057100727193 bayes_pls_golite062009
  • catalytic activity
    		•  2.69237345802213 bayes_pls_golite062009
  • UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity
    		•  2.38541436302257 bayes_pls_golite062009
  • ligase activity
    		•  1.78239041548143 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  1.71419714956382 bayes_pls_golite062009
  • UDP-N-acetylmuramate-L-alanine ligase activity
    		•  1.40798709360658 bayes_pls_golite062009
  • UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
    		•  1.15437935952018 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.68

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle