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Protein Overview: gi|18657020

General Information:
Name(s) found: gi|18657020 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|18657020|gb|AAL78107.1|AC093568_17 Putative polyprotein [Oryza sativa] [NCBI NR]
    • Organism: Oryza sativa
    Length: 1819 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHPPNHRG EGMIDFVAEL ARMTLVVGYP DAPEYTTIPP LSGELPHRVR LEVHGYVGTC  60
   61 LANMAVEASG GTADHACQEA AYLMMARLRE RHNYIFHDTA YRYHPSRAHG DGVSSFRPTA 120
  121 GENDTTFGHM CAVMRGLDRM HSDLHKATKA LNDGKLMRIV ALKDEIARLK KENAQLKGLP 180
  181 APGGVRIRTT PRKTTKAPVR IQLAPRNPPP AAAPAAPPVP PAAPAAPVPA APAPAPAFVL 240
  241 SFAPASAVRG PASGIGGWLP ATPSGSRDRS SSGSQTGSSE TYLPGSRSRS EGPGCLFGMV 300
  301 NTRTGNRTTG EGSNGEERVD GMHPNGDPGN GPPPLPENPT LAQVMAHQTQ MMAAMMQQMQ 360
  361 QQHQQMHQRM MQYAEQQHQQ FGPPPPQSKL PEFLRVRPPT FSSTTNPMEA NDWLHAIEKK 420
  421 LNLLQCNDQE KVAFATHQLQ GPASAWWDNH MATRPPGTEV TWAEFCRSFR KAQVPDGVVA 480
  481 QKKREFRALH QGNRTVTEYL HEFNRLARYA PEDVRTDAEK QEKFMAGLDD ELTNQLISGD 540
  541 YADFERLVDK AIRQEDQRNK MDRKRKAAQF RAHQGSHQRP RFTPGQQGGP TTMIVRQHRP 600
  601 FNPSNFHQGT SGSQNHHGGQ PNRGAAPRPP MAPAQSGQPT QAKKETGAKP GSCFNCGELG 660
  661 HFADKCPKPR RAGPRFIQAR VNHASAEEAQ AAPEVVLGTF PVNSIPATVL FDSGATHSFI 720
  721 SKKFVGMHGL IREELSTPMR VHTPGNSSTS VQFSPSITIE IQRSPFLANL ILLDSKGLDV 780
  781 ILGMDWLTKF KGVIDCANRT VTLTNEKGET VVYKSLVSPR KGVSLNQIET EIPVDTVEKN 840
  841 SRKLDDIPIV CEYPEVFPED LTTMPPKREI EFRIDLAPGT APIYKRPYRM AANELAEVKK 900
  901 QVDEQLQKGY IRPSTSPWGA PVIFVEKKDK TKRMCVDYRA LNEVTIKNKY PLPRIDDLFD 960
  961 QLKGAKVFSK IDLRSGYHQL RIREEDIPKT AFTTRYGLYE CTVMSFGLTN APAFFMNLMN1020
 1021 KVFMEFLDKF VVVFIDDILI YSKSEEEHEQ HLRLVLEKLK EHQLYAKFSK CDFWLTEVKF1080
 1081 LGHVITAQGV AVDPSNVESV TKWTPPKTVS QIRSFLGLAG YYRRFIENFS RIARPMTQLL1140
 1141 KKDEKFKWTA ECDKSFEELK KKLVSAPVLI LPDQMKDFQV YCDASRHGLG CVLMQEGRVV1200
 1201 AYASRQLRPH EGNYPTHDLE LAAVVHALKI WRHYLIGNRC EVYTDHKSLK YIFTQPDLNL1260
 1261 RQRRWLELIK DYDMSIHYHP GKANVVADAL SRKSYCTALC TEGMCEELRQ EFEHLNIGIV1320
 1321 EHGFVAALEA RPTLVDQVRA AQVNDPEIAE LKKNMRVGKA RDFLEDEHGT IWMGERLCVP1380
 1381 DDKELKDLIL TEAHQTQYSI HPGSTKMYQD LKEKFWWVSM RREIAEFVAL CDVCQRVKAE1440
 1441 HQRPAGLLQP LQIPEWKWEE IGMDFITGLP RTSSGHDSIW VVVDRLTKVA HFIPVHTTYT1500
 1501 GKRLAELYLA RIMCLHGVPR KIVSDRGSQF TSKFWQKLQE ELGTRLNFST AYHPQTDGQT1560
 1561 ERVNQILEDM LRACALDFGG AWDKSLPYAE FSYNNSYQAS LQMAPFEALY GRKCRTPLFW1620
 1621 DQTGERQLFG TEVLAEAEEK VRIIRERLRI AQSRQKSYAD NRRRELTFEA GDYVYLRVTP1680
 1681 LRGVHRFQTK GKLAPRFVGP YKILERRGEV AYQLELPSNM IGIHDVFHVS QLKKCLRVPE1740
 1741 EQADSEHIDI QEDLTYVEKP VRILDTSERR TRNKVTRFCR VQWSHHSEEE ATWEREDELK1800
 1801 AAHPHLFTSS SESRGRDSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..245] deduced N/A No confident structure predictions are available.
    2 View Details [246..323] deduced N/A No confident structure predictions are available.
    3 View Details [324..616] PSI-BLAST 22.154902 No description for 3dikA was found.
    4 View Details [617..746] PSI-BLAST 4.522879 HIV nucleocapsid
    5 View Details [747..844] PSI-BLAST 23.0 No description for 2f3kA was found.
    6 View Details [845..1402] PSI-BLAST 153.0 No description for 3di6A was found.
    7 View Details [1403..1696] PSI-BLAST 55.522879 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    8 View Details [1697..1819] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle