| Protein: | gi|18657020 |
| Organism: | Oryza sativa |
| Length: | 1819 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for gi|18657020.
|
Region A: Residues: [1-245] |
1 11 21 31 41 51
| | | | | |
1 MAGHPPNHRG EGMIDFVAEL ARMTLVVGYP DAPEYTTIPP LSGELPHRVR LEVHGYVGTC 60
61 LANMAVEASG GTADHACQEA AYLMMARLRE RHNYIFHDTA YRYHPSRAHG DGVSSFRPTA 120
121 GENDTTFGHM CAVMRGLDRM HSDLHKATKA LNDGKLMRIV ALKDEIARLK KENAQLKGLP 180
181 APGGVRIRTT PRKTTKAPVR IQLAPRNPPP AAAPAAPPVP PAAPAAPVPA APAPAPAFVL 240
241 SFAPA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [246-323] |
1 11 21 31 41 51
| | | | | |
1 SAVRGPASGI GGWLPATPSG SRDRSSSGSQ TGSSETYLPG SRSRSEGPGC LFGMVNTRTG 60
61 NRTTGEGSNG EERVDGMH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [324-616] |
1 11 21 31 41 51
| | | | | |
1 PNGDPGNGPP PLPENPTLAQ VMAHQTQMMA AMMQQMQQQH QQMHQRMMQY AEQQHQQFGP 60
61 PPPQSKLPEF LRVRPPTFSS TTNPMEANDW LHAIEKKLNL LQCNDQEKVA FATHQLQGPA 120
121 SAWWDNHMAT RPPGTEVTWA EFCRSFRKAQ VPDGVVAQKK REFRALHQGN RTVTEYLHEF 180
181 NRLARYAPED VRTDAEKQEK FMAGLDDELT NQLISGDYAD FERLVDKAIR QEDQRNKMDR 240
241 KRKAAQFRAH QGSHQRPRFT PGQQGGPTTM IVRQHRPFNP SNFHQGTSGS QNH
|
| Detection Method: | |
| Confidence: | 22.154902 |
| Match: | 3dikA |
| Description: | No description for 3dikA was found. |
|
Region A: Residues: [617-746] |
1 11 21 31 41 51
| | | | | |
1 HGGQPNRGAA PRPPMAPAQS GQPTQAKKET GAKPGSCFNC GELGHFADKC PKPRRAGPRF 60
61 IQARVNHASA EEAQAAPEVV LGTFPVNSIP ATVLFDSGAT HSFISKKFVG MHGLIREELS 120
121 TPMRVHTPGN
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [747-844] |
1 11 21 31 41 51
| | | | | |
1 SSTSVQFSPS ITIEIQRSPF LANLILLDSK GLDVILGMDW LTKFKGVIDC ANRTVTLTNE 60
61 KGETVVYKSL VSPRKGVSLN QIETEIPVDT VEKNSRKL
|
| Detection Method: | |
| Confidence: | 23.0 |
| Match: | 2f3kA |
| Description: | No description for 2f3kA was found. |
|
Region A: Residues: [845-1402] |
1 11 21 31 41 51
| | | | | |
1 DDIPIVCEYP EVFPEDLTTM PPKREIEFRI DLAPGTAPIY KRPYRMAANE LAEVKKQVDE 60
61 QLQKGYIRPS TSPWGAPVIF VEKKDKTKRM CVDYRALNEV TIKNKYPLPR IDDLFDQLKG 120
121 AKVFSKIDLR SGYHQLRIRE EDIPKTAFTT RYGLYECTVM SFGLTNAPAF FMNLMNKVFM 180
181 EFLDKFVVVF IDDILIYSKS EEEHEQHLRL VLEKLKEHQL YAKFSKCDFW LTEVKFLGHV 240
241 ITAQGVAVDP SNVESVTKWT PPKTVSQIRS FLGLAGYYRR FIENFSRIAR PMTQLLKKDE 300
301 KFKWTAECDK SFEELKKKLV SAPVLILPDQ MKDFQVYCDA SRHGLGCVLM QEGRVVAYAS 360
361 RQLRPHEGNY PTHDLELAAV VHALKIWRHY LIGNRCEVYT DHKSLKYIFT QPDLNLRQRR 420
421 WLELIKDYDM SIHYHPGKAN VVADALSRKS YCTALCTEGM CEELRQEFEH LNIGIVEHGF 480
481 VAALEARPTL VDQVRAAQVN DPEIAELKKN MRVGKARDFL EDEHGTIWMG ERLCVPDDKE 540
541 LKDLILTEAH QTQYSIHP
|
| Detection Method: | |
| Confidence: | 153.0 |
| Match: | 3di6A |
| Description: | No description for 3di6A was found. |
|
Region A: Residues: [1403-1696] |
1 11 21 31 41 51
| | | | | |
1 GSTKMYQDLK EKFWWVSMRR EIAEFVALCD VCQRVKAEHQ RPAGLLQPLQ IPEWKWEEIG 60
61 MDFITGLPRT SSGHDSIWVV VDRLTKVAHF IPVHTTYTGK RLAELYLARI MCLHGVPRKI 120
121 VSDRGSQFTS KFWQKLQEEL GTRLNFSTAY HPQTDGQTER VNQILEDMLR ACALDFGGAW 180
181 DKSLPYAEFS YNNSYQASLQ MAPFEALYGR KCRTPLFWDQ TGERQLFGTE VLAEAEEKVR 240
241 IIRERLRIAQ SRQKSYADNR RRELTFEAGD YVYLRVTPLR GVHRFQTKGK LAPR
|
| Detection Method: | |
| Confidence: | 55.522879 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1697-1819] |
1 11 21 31 41 51
| | | | | |
1 FVGPYKILER RGEVAYQLEL PSNMIGIHDV FHVSQLKKCL RVPEEQADSE HIDIQEDLTY 60
61 VEKPVRILDT SERRTRNKVT RFCRVQWSHH SEEEATWERE DELKAAHPHL FTSSSESRGR 120
121 DSV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
