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Protein Overview: gi|16924038

General Information:
Name(s) found: gi|16924038 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|16924038|gb|AAL31650.1|AC079179_5 Putative Tam3-like transposon protein [Oryza sativa] [NCBI NR]
    • Organism: Oryza sativa
    Length: 737 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDTDETVAC EINHTQSQDT KTGVSTTGVV DASKDKEEQQ QSKDEEKADE ESRKRKPMAL  60
   61 RSDVWESFSK VKLANGDERA KCKWCTKLFH CGSRTNGTSS LKAHLKICKK NPNKPVVDNQ 120
  121 GTLQLTPCDG NSTLGTVTTW KFDPDKLRRC FAEMIIEDEQ PFVLSERSGL RKFMTLACPR 180
  181 FVLPSRRTIT RACVKVYEDE KEKLKKFFKD NCVRVCLTTD TWTAKNSQNF MCVTAHFIDN 240
  241 EWNLQKKIIG FFLVKGHRGE DIGKSLENCL AEWGIDKVFT ITVDNASANN NAIKYMRRVL 300
  301 NESKGCVAEG EYIHMRCAAH IINLIVGDGL KEIGTSIQRV RAAVKFIRCG TSRLVKFKKC 360
  361 AELAKVQSKA FLNLDICTRW NSTYLMLNAA EKYQKAFERY SDEDPYYKLE LEGENGPGVP 420
  421 TRADWEKARK MADFLEHFYD LTLRVSVQSR TTSHTYFHEI ADVLLLLREW SHSEDKLSKE 480
  481 MGTRMLMKYY KYWGEKYGER QGDREKRGEK DKGDQLLNFT VFFCVAIDPR YKLSNCIRMG 540
  541 IKVMFGDTVG EKVWETVNTY FRALFEEYKE MYTPKDKAPQ PTESESTAET SKRVSCRWMS 600
  601 VITQQLNSEG GSGTIKSEVD KYLSEDNEPD TPKFDILKWW KANSTRFPIL SHLACDLLAI 660
  661 PITSVASESA FSAGGRTLDD FRTSLTPRMV ERLVCANDWL RGGNYVSVEE DSEQMALLEE 720
  721 ELGDLSISKE DTPAATQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 3.69897 Solution Structure of the zinc finger BED domain of the zinc finger BED domain containing protein 1
    2 View Details [143..737] PSI-BLAST 41.154902 Three-dimensional structure of the Hermes DNA transposase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.414217765611205 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.722279828632226 bayes_pls_golite062009
  • hydrolase activity
    		•  0.29272620969648 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.24934115119652 bayes_pls_golite062009
  • nuclease activity
    		•  0.239989310123501 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle