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Protein Overview: gi|50938775, gi|...

General Information:
Name(s) found: gi|50938775 [NCBI NR]
gi|38175737 [NCBI NR]
gi|215695373 [NCBI NR]
gi|115473043 [NCBI NR]
gi|113611656 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|50938775|ref|XP_478915.1| putative heterogeneous nuclear ribonucleoprotein A1 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|38175737|dbj|BAC55617.2| putative heterogeneous nuclear ribonucleoprotein A1 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215695373|dbj|BAG90564.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115473043|ref|NP_001060120.1| Os07g0584500 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113611656|dbj|BAF22034.1| Os07g0584500 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 472 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADSGKLFV GGISWETDED RLREYFSRFG EVTEAVIMRD RNTGRARGFG FVVFTDAGVA  60
   61 ERVTMDKHMI DGRMVEAKKA VPRDDQSITS KNNGSSIGSP GPGRTRKIFV GGLASNVTEV 120
  121 EFRRYFEQFG VITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALHKNFHE LNGKMVEVKR 180
  181 AVPKEQSPGP AARSPAGGQN YAMSRVHSFL NGFNQGYNPN PIGGYGMRVD GRYGLLTGAR 240
  241 NGFSSFGPGY GMGMNSESGM NANFGANSSF VNNSNGRQIG SFYNGSSNRL GSPIGYVGLN 300
  301 DDSGSLLSSM SRNVWGNENL NYPNNPTNMS SFAPSGTGGQ MGITSDGINW GGPTPGHGMG 360
  361 NISSLGLANL GRGAGDSFGL PSGSYGRSNA TGTIGEPFSA PPNAYEVNNA DTYGSSSIYG 420
  421 DSTWRFTSSE IDMPPFGNDL GNVDPDIKSN IPASYMGNYT VNNNQTSRGI TS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..192] PSI-BLAST 55.221849 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [193..269] deduced N/A No confident structure predictions are available.
    3 View Details [270..472] PSI-BLAST 7.522879 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle