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Protein Overview: gi|33146483, gi|...

General Information:
Name(s) found: gi|50937583 [NCBI NR]
gi|33146483 [NCBI NR]
gi|115472287 [NCBI NR]
gi|113611278 [NCBI NR]
Description(s) found:
Found 7 descriptions.
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  • gi|50937583|ref|XP_478319.1| putative DEAH-box RNA helicase [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|33146483|dbj|BAC79592.1| putative DEAH-box RNA helicase [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115472287|ref|NP_001059742.1| Os07g0508000 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113611278|dbj|BAF21656.1| Os07g0508000 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1280 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGDMDATMT TLGPEDDTGA QGLILPSRDR VMYRPPPGKS ALGLDLLAHR KREAEGGNAF  60
   61 KPPPQKVVAA ATSIDEDEKP GPAESDEKSL SSGHRGSVSR RYRGANSDER TSFKEPTITD 120
  121 EDGRGPSPSH RDGSYRQDTH KSRSSQGSHS RSTPRRYDDY EDRGSRDKHG ERERSASIGY 180
  181 SSSGRRGHHD DRESHNRRDE RERSTSVDYM NKRSRHEHSS RSSRTPARSD WDSGRWEWED 240
  241 TPRREYRDDR SNSHRQHPSP SPMLAAASPD ARLVSPWLGG NTPRYAASPW DNVSPSPAPI 300
  301 RASGSSKGSS YPRSGGRSHQ LTFSSTSASN DRESDRSPSD ADGNYEISEE MMQEMDYNAD 360
  361 RAWYDCEEHN TMFDGDNSMY LEDDSSYKKR EAQLPKRLTR KDGSLMTLAQ SKKLSQMTAD 420
  421 NAQWEDRQLL RSGAVRGTEV QTEFDDEDER KVILLVHDTK PPFLDGRVVF TKQAEPVMPL 480
  481 KDPTSDMAIV ARKGSALVRE IREKQSMNKS RQRFWELAGS KLGNILGVEK TAEQVDADTA 540
  541 TVGDQGEIDF KEEAKFSQHM KVKAEAVSDF AKSKSLSQQR QYLPIFTVRD DLLQVVRENQ 600
  601 VVVVVGETGS GKTTQLTQYL HEDGYTTTGI VGCTQPRRVA AMSVAKRVSE EMETELGHKV 660
  661 GYAIRFEDMT SPNTIIKYMT DGVLLRETLK DADLDKYRVI VMDEAHERSL NTDVLFGILK 720
  721 KVVARRRDFK LIVTSATLNA DKFSKFFGGV PVFHIPGRTF PVNIMFSKTP CEDYVEAAVK 780
  781 QAMTIHITSG PGDILIFMTG QEEIEATCYA LAERLEQLIS SSTKTVPKLS ILPIYSQLPA 840
  841 DLQAKIFQKA EEGTRKCIVA TNIAETSLTV DGIFYVIDTG YGKMKVYNPR MGMDALQVFP 900
  901 VSRAAADQRA GRAGRTGPGT CYRLFTESAY QNEMLPNPVP EIQRTNLGNV VLLLKSLKVE 960
  961 NLLDFDFMDP PPQENILNSM YQLWVLGALN NVGALTVIGW KMVEFPLDPT LAKMLLMGEQ1020
 1021 LECLDEVLTI VSMLSVPSVF FRPKDRAEES DAAREKFFVP ESDHLTLLNV YLQWKSNQYR1080
 1081 GDWCNDHFLH VKGLRKAREV RSQLLDILKT LKIPLTSCHM EWDVVRKAIC SAYFHNAARL1140
 1141 KGVGEYVNCR NGMPCHLHPS SALYGLGYTP DYVVYHELVL TTKEYMQCVT AVDPQWLAEL1200
 1201 GPMFFSVKET DTSLLDHKKR QKEDKTAMEE EMEKLRQEQA EAARLEKERE REKRAKQQQQ1260
 1261 VSMPGLKKGS TYLRPKRMGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..169] MSA 3.148996 View MSA. No confident structure predictions are available.
    2 View Details [170..283] deduced N/A No confident structure predictions are available.
    3 View Details [284..519] deduced N/A No confident structure predictions are available.
    4 View Details [520..582] PSI-BLAST 58.522879 No description for 2db3A was found.
    5 View Details [583..1017] PSI-BLAST 19.0 No description for 2z83A was found.
    6 View Details [1018..1280] MSA 2.702979 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle