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View Structure Prediction Details

Protein: gi|33146483, gi|...
Organism: Oryza sativa Japonica Group
Length: 1280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|33146483, gi|....

Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGDMDATMT TLGPEDDTGA QGLILPSRDR VMYRPPPGKS ALGLDLLAHR KREAEGGNAF  60
   61 KPPPQKVVAA ATSIDEDEKP GPAESDEKSL SSGHRGSVSR RYRGANSDER TSFKEPTITD 120
  121 EDGRGPSPSH RDGSYRQDTH KSRSSQGSHS RSTPRRYDDY EDRGSRDKH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GERERSASIG YSSSGRRGHH DDRESHNRRD ERERSTSVDY MNKRSRHEHS SRSSRTPARS  60
   61 DWDSGRWEWE DTPRREYRDD RSNSHRQHPS PSPMLAAASP DARLVSPWLG GNTP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [284-519]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYAASPWDNV SPSPAPIRAS GSSKGSSYPR SGGRSHQLTF SSTSASNDRE SDRSPSDADG  60
   61 NYEISEEMMQ EMDYNADRAW YDCEEHNTMF DGDNSMYLED DSSYKKREAQ LPKRLTRKDG 120
  121 SLMTLAQSKK LSQMTADNAQ WEDRQLLRSG AVRGTEVQTE FDDEDERKVI LLVHDTKPPF 180
  181 LDGRVVFTKQ AEPVMPLKDP TSDMAIVARK GSALVREIRE KQSMNKSRQR FWELAG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [520-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKLGNILGVE KTAEQVDADT ATVGDQGEID FKEEAKFSQH MKVKAEAVSD FAKSKSLSQQ  60
   61 RQY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.522879
Match: 2db3A
Description: No description for 2db3A was found.

Predicted Domain #5
Region A:
Residues: [583-1017]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPIFTVRDDL LQVVRENQVV VVVGETGSGK TTQLTQYLHE DGYTTTGIVG CTQPRRVAAM  60
   61 SVAKRVSEEM ETELGHKVGY AIRFEDMTSP NTIIKYMTDG VLLRETLKDA DLDKYRVIVM 120
  121 DEAHERSLNT DVLFGILKKV VARRRDFKLI VTSATLNADK FSKFFGGVPV FHIPGRTFPV 180
  181 NIMFSKTPCE DYVEAAVKQA MTIHITSGPG DILIFMTGQE EIEATCYALA ERLEQLISSS 240
  241 TKTVPKLSIL PIYSQLPADL QAKIFQKAEE GTRKCIVATN IAETSLTVDG IFYVIDTGYG 300
  301 KMKVYNPRMG MDALQVFPVS RAAADQRAGR AGRTGPGTCY RLFTESAYQN EMLPNPVPEI 360
  361 QRTNLGNVVL LLKSLKVENL LDFDFMDPPP QENILNSMYQ LWVLGALNNV GALTVIGWKM 420
  421 VEFPLDPTLA KMLLM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 2z83A
Description: No description for 2z83A was found.

Predicted Domain #6
Region A:
Residues: [1018-1280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEQLECLDEV LTIVSMLSVP SVFFRPKDRA EESDAAREKF FVPESDHLTL LNVYLQWKSN  60
   61 QYRGDWCNDH FLHVKGLRKA REVRSQLLDI LKTLKIPLTS CHMEWDVVRK AICSAYFHNA 120
  121 ARLKGVGEYV NCRNGMPCHL HPSSALYGLG YTPDYVVYHE LVLTTKEYMQ CVTAVDPQWL 180
  181 AELGPMFFSV KETDTSLLDH KKRQKEDKTA MEEEMEKLRQ EQAEAARLEK EREREKRAKQ 240
  241 QQQVSMPGLK KGSTYLRPKR MGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle