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Protein Overview: CFM2_ARATH

General Information:
Name(s) found: CFM2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] [NCBI NR]
  • gi|30678323|ref|NP_186786.2| ATCFM2 (CRM FAMILY MEMBER 2); RNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1 [Swiss-Prot]
  • At3g01370 [Arabidopsis thaliana]gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]gi|30678323|ref|NP_186786.2| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: ATCFM2 | ATCFM2/CFM2 (CRM FAMILY MEMBER 2) | chr3:139040-143484 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g01370 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3:139033-143477 FORWARD LENGTH=1011 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g01370 OS=Arabidopsis thaliana GN=CFM2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1011 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [RCA]
    Biological Process: Group II intron splicing [IMP]
    Group I intron splicing [IMP]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI  60
   61 QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP LPKQLPIHRV GHTIDTSWST 120
  121 PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR 180
  181 LTKKLKIGKA GITEGIVNGI HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR 240
  241 SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM 300
  301 VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV 360
  361 PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG RNRNLQGLAV AIVKLWEKCE 420
  421 LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR 480
  481 QTMIMENSSV HGNKLTENEE EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE 540
  541 KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL 600
  601 GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY 660
  661 AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL KLHVLKLSNN IEELNRQLVE 720
  721 DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG 780
  781 EVDPLTTSSQ EYQEDESESA SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF 840
  841 LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR 900
  901 SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY 960
  961 RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA LIEAIRLECG L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..163] MSA 1.024992 View MSA. No confident structure predictions are available.
    2 View Details [164..262] FFAS03 3.62 hypothetical protein YhbY
    3 View Details [263..495] deduced N/A No confident structure predictions are available.
    4 View Details [496..568] deduced N/A No confident structure predictions are available.
    5 View Details [569..679] PSI-BLAST 28.154902 YhbY homologue HI1333
    6 View Details [680..867] deduced N/A No confident structure predictions are available.
    7 View Details [868..1011] FFAS03 2.27 Solution structure of the hypothetical protein SAV1595 from Staphylococcus aureus, a putative RNA binding protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle