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Protein Overview: LDL3_ORYSJ

General Information:
Name(s) found: LDL3_ORYSJ [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 811 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQPPPYTP LPLLSSFPPN PYPDQTPDPA STPTLVLPNP AFPNKRKRTG FRRKLPSGSP  60
   61 AAPVAVAASP SAQPPPRASA ADDIIVINRE PTAEAVTALT AGFPADSLTD EEIEAGVVSD 120
  121 VGGIEQVNYI LIRNHLLTRW RETFNSWLAK ESFATLIPPH CDHLLNAAYS FLVSHGHINF 180
  181 GVAPAIKERI PKEPTRHNTV IVVGAGLAGL AAARQLVAFG FKVVVLEGRK RCGGRVYTKK 240
  241 MEGGGRSAAG DLGGSVLTGT FGNPLGIVAK QLGLPMHKIR DKCPLYRPDG SPVDPEVDKK 300
  301 VEGTFNKLLD KSSLLRASMG DVAMDVSLGA ALETLRQTDG DLSTDQEMNL FNWHLANLEY 360
  361 ANAGLLSKLS LAFWDQDDPY DMVGDHCFLP GGNGRLVQSL AENVPIVYER TVHTIRYGGD 420
  421 GVQVVVNGGQ VYEGDMALCT VPLGVLKNGG VKFVPELPQR KLDSIKRLGF GLLNKVAMLF 480
  481 PHVFWSTDLD TFGHLTEDPS HRGEFFLFYS YATVAGGPLL MALVAGEAAH NFETTPPTDA 540
  541 VSSVLKILRG IYEPQGIEVP DPLQSVCTRW GTDSFSLGSY SHVAVGASGD DYDILAESVG 600
  601 DGRLFFAGEA TTRRYPATMH GAFISGLREA ANITLHANAR AAKSKVEKGP STNTQACAAL 660
  661 LMDLFRQPDL EFGSFSVIFG GQASDPKSPA ILKVELGGPR KKGATEGGKA DQHHSNKLLF 720
  721 QQLQSHFNQQ QQLYVYTLLS RQQAMELREV RGGDEMRLHY LCEKLGVKLV GRKGLGPGAD 780
  781 AVIASIKAER NSSRTKTRPS KLKIGIPKSK S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..481] PSI-BLAST 36.154902 No description for 2vdcG was found.
    2 View Details [482..655] PSI-BLAST 49.69897 No description for 2v1dA was found.
    3 View Details [656..811] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.55

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle