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View Structure Prediction Details

Protein: LDL3_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 811 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for LDL3_ORYSJ.

Predicted Domain #1
Region A:
Residues: [1-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQPPPYTP LPLLSSFPPN PYPDQTPDPA STPTLVLPNP AFPNKRKRTG FRRKLPSGSP  60
   61 AAPVAVAASP SAQPPPRASA ADDIIVINRE PTAEAVTALT AGFPADSLTD EEIEAGVVSD 120
  121 VGGIEQVNYI LIRNHLLTRW RETFNSWLAK ESFATLIPPH CDHLLNAAYS FLVSHGHINF 180
  181 GVAPAIKERI PKEPTRHNTV IVVGAGLAGL AAARQLVAFG FKVVVLEGRK RCGGRVYTKK 240
  241 MEGGGRSAAG DLGGSVLTGT FGNPLGIVAK QLGLPMHKIR DKCPLYRPDG SPVDPEVDKK 300
  301 VEGTFNKLLD KSSLLRASMG DVAMDVSLGA ALETLRQTDG DLSTDQEMNL FNWHLANLEY 360
  361 ANAGLLSKLS LAFWDQDDPY DMVGDHCFLP GGNGRLVQSL AENVPIVYER TVHTIRYGGD 420
  421 GVQVVVNGGQ VYEGDMALCT VPLGVLKNGG VKFVPELPQR KLDSIKRLGF GLLNKVAMLF 480
  481 P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.154902
Match: 2vdcG
Description: No description for 2vdcG was found.

Predicted Domain #2
Region A:
Residues: [482-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HVFWSTDLDT FGHLTEDPSH RGEFFLFYSY ATVAGGPLLM ALVAGEAAHN FETTPPTDAV  60
   61 SSVLKILRGI YEPQGIEVPD PLQSVCTRWG TDSFSLGSYS HVAVGASGDD YDILAESVGD 120
  121 GRLFFAGEAT TRRYPATMHG AFISGLREAA NITLHANARA AKSKVEKGPS TNTQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.69897
Match: 2v1dA
Description: No description for 2v1dA was found.

Predicted Domain #3
Region A:
Residues: [656-811]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ACAALLMDLF RQPDLEFGSF SVIFGGQASD PKSPAILKVE LGGPRKKGAT EGGKADQHHS  60
   61 NKLLFQQLQS HFNQQQQLYV YTLLSRQQAM ELREVRGGDE MRLHYLCEKL GVKLVGRKGL 120
  121 GPGADAVIAS IKAERNSSRT KTRPSKLKIG IPKSKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle