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Protein Overview: gi|38344443, gi|...

General Information:
Name(s) found: gi|50926592 [NCBI NR]
gi|38344443 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|50926592|ref|XP_473243.1| OSJNBa0038O10.15 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|38344443|emb|CAE05649.2| OSJNBa0038O10.15 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1989 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQAKAHNL SPSVSGDDGE PNPRRRARTP PPPPRQSPRR EEALERVEGS ATSTSTGDGE  60
   61 GRRDGERRLL VYGDGSTPQG ALLRHPPIVP DPESPAQRWL DDVANLVMTA RQRLGAGGRS 120
  121 SATKTSGAAT TGSVSSRRRA RRAAAVARHS AATPSSAPPT QEDLRGGPDA RISIERQRNG 180
  181 RRAAHATEGA SSSGVSHQHG RGDQPSVPPV GGVGCRAFVA SLRNVRWPPR FRPTIAEKYD 240
  241 GSVNPAEFLQ VYTTGIEAAG GDDRVMANFF PMALKGQARG WLMNLPPASV HSWEDLCQQF 300
  301 TMNFQGTYPH PGEEADLHAV QRRDDESLRS YIQRFCQVRN TIPCIPAHAV IYAFRGGVRH 360
  361 NRMLEKIASK EPQTTAELFQ LADRVARKEE AWTWNPSGSG VAASAAPGSA ARTGRRDRRK 420
  421 KKRSAHSDDE GHVLAVEGAS RATRKGRPAT DKKKEAGAPS RERPTGKWCI VHNTSLHDLT 480
  481 DCRAVKSLAE RTRKWEEERR QERREGKSPA VPSGNRRSEA KQKAPAEDID DGDDDLGFQE 540
  541 PGATIATVDG GACAHVSRRS LKAMKRELLA AAPTHEATRR ARWSEVALTF DQTDHPPCVA 600
  601 RGGQIAMVVS PTVCNVKLGR VLIDGGAALN ILSPAAFDAI KAPGMVLRPS QPIIGVTPGH 660
  661 TWPPGHIDLP VTFGGSANFR TERVNFDVAD LSLPYNAVLG RPALVKFMAA VHYAYLQMKM 720
  721 PGPGGPISVH GDLKVALACM EQRADHLAAA SKPEGGDERL GTSVPAAPRQ RIVTCDEVPE 780
  781 DALVSFLRAN ADVFAWRPAD MPGVPREVIE HRLAVRSGAR PVRQKVRRQA PERQAFIREE 840
  841 VARLLEAGFI REVIHPEWLA NPVVVPKANG KLRMCIDYTD LNKACPKDPY PLPRIDQIVD 900
  901 STAGCDLLCF LDAYSGYHQI RMAREDEEKT AFITPIGTYC YTTMPFGLKN AGPTFQRTTR 960
  961 ISLGSQIGRN VEAYVDDLVV KTRNQETLLS DLAETFESLR SARIKLNPDK CVFGVPAGKL1020
 1021 LGFLVSARGI EANPEKIRAI ERMRPPSKLR DVQCITGCMA ALSRFISRLG EKALPLFKLL1080
 1081 KRSGPFTWTE EAERALTQLK AYLSSPPVLV ALEPNEPLLL YLAATPQVVS AALVVERDED1140
 1141 NPHSAHPHPV LAWPGREQGG EAPEPNGGPR PPTTGAGPLP ACQTVPGAPD PQDGPRATAG1200
 1201 RPHLSPSDPE ANPVPTRPGR EQGEEAPEPN GGLRPLTTGV GPLPACPTTP GAPDPQDGPE1260
 1261 ATVGRPPLSS SDPEVVGTED ECTPEALRDA KTRYPQAQKM FYAILIASRK LRHYFQAHRV1320
 1321 TVVTSYPLGQ ILHNREGTRR VVKWAIELSE FDLHFEPRHA IKSQALADFV AEWTPAPEPV1380
 1381 SVPEASSGPS QPPHTAHWVM QFDGSLSLQG AGAGVTLTSP SGDVLRYLVR LDFQATNNMA1440
 1441 EYEGLLAGLR VAAGLGIRRL LVLGDSQLVV NQVCKEYRCS DPQMDAYVRQ VRCMEHHFDG1500
 1501 IELRHVPRRD NTVADELSRL ASSRAETPPG AFEERLAQPS ARPDPLGETD APDRPPRPVG1560
 1561 VQASGPEGSA PSSLRLIAWI AEIQAYLTDK TLPEDREGSE RVQRISKRYV LVEGTLYRRA1620
 1621 ANGILLKCIP REQGVELLAN IHEGECGAHS ASRTLVGKAF RQGFYWPTAL NDAVDLVRRC1680
 1681 RACQFHAKQI HQPAQALQII PLSWSFAVWG LDILGPFRRA PGGFEYLYVA IDKFTKWPEA1740
 1741 YPVVKIDKHS ALKFIKGITA RFGVPNRIIT DNGTQFTSEL FGDYCEDMGI KLCFASPAHP1800
 1801 RSNGQVERAN AEILRGLKTK TFNILKKHGD SWIEELPAVL WANQTTPSRA TGETPFFLVY1860
 1861 GAEAVLPSEL TLRSPRATIY CEADQDQLRR DDLDYLEERR RRAALRAARY QQSLRRYHQR1920
 1921 HVRARSLCVD DLVLRRVQTR AGLSKLSPMW EGPYRVIGVP RPGSVRMATG DGTELPNPWN1980
 1981 IEHLRRFYP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..224] deduced N/A No confident structure predictions are available.
    2 View Details [225..310] deduced N/A No confident structure predictions are available.
    3 View Details [311..574] PSI-BLAST 17.221849 No description for 3dikA was found.
    4 View Details [575..650] PSI-BLAST 5.045757 HIV nucleocapsid
    5 View Details [651..797] PSI-BLAST 26.09691 HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor
    6 View Details [798..1317] PSI-BLAST 136.0 No description for 3drsA was found.
    7 View Details [1318..1395] PSI-BLAST 6.69897 N-terminal Zn binding domain of HIV integrase
    8 View Details [1396..1646] deduced N/A No confident structure predictions are available.
    9 View Details [1647..1925] PSI-BLAST 38.39794 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    10 View Details [1926..1989] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle