| Protein: | gi|38344443, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1989 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for gi|38344443, gi|....
|
Region A: Residues: [1-224] |
1 11 21 31 41 51
| | | | | |
1 MAEQAKAHNL SPSVSGDDGE PNPRRRARTP PPPPRQSPRR EEALERVEGS ATSTSTGDGE 60
61 GRRDGERRLL VYGDGSTPQG ALLRHPPIVP DPESPAQRWL DDVANLVMTA RQRLGAGGRS 120
121 SATKTSGAAT TGSVSSRRRA RRAAAVARHS AATPSSAPPT QEDLRGGPDA RISIERQRNG 180
181 RRAAHATEGA SSSGVSHQHG RGDQPSVPPV GGVGCRAFVA SLRN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [225-310] |
1 11 21 31 41 51
| | | | | |
1 VRWPPRFRPT IAEKYDGSVN PAEFLQVYTT GIEAAGGDDR VMANFFPMAL KGQARGWLMN 60
61 LPPASVHSWE DLCQQFTMNF QGTYPH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [311-574] |
1 11 21 31 41 51
| | | | | |
1 PGEEADLHAV QRRDDESLRS YIQRFCQVRN TIPCIPAHAV IYAFRGGVRH NRMLEKIASK 60
61 EPQTTAELFQ LADRVARKEE AWTWNPSGSG VAASAAPGSA ARTGRRDRRK KKRSAHSDDE 120
121 GHVLAVEGAS RATRKGRPAT DKKKEAGAPS RERPTGKWCI VHNTSLHDLT DCRAVKSLAE 180
181 RTRKWEEERR QERREGKSPA VPSGNRRSEA KQKAPAEDID DGDDDLGFQE PGATIATVDG 240
241 GACAHVSRRS LKAMKRELLA AAPT
|
| Detection Method: | |
| Confidence: | 17.221849 |
| Match: | 3dikA |
| Description: | No description for 3dikA was found. |
|
Region A: Residues: [575-650] |
1 11 21 31 41 51
| | | | | |
1 HEATRRARWS EVALTFDQTD HPPCVARGGQ IAMVVSPTVC NVKLGRVLID GGAALNILSP 60
61 AAFDAIKAPG MVLRPS
|
| Detection Method: | |
| Confidence: | 5.045757 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [651-797] |
1 11 21 31 41 51
| | | | | |
1 QPIIGVTPGH TWPPGHIDLP VTFGGSANFR TERVNFDVAD LSLPYNAVLG RPALVKFMAA 60
61 VHYAYLQMKM PGPGGPISVH GDLKVALACM EQRADHLAAA SKPEGGDERL GTSVPAAPRQ 120
121 RIVTCDEVPE DALVSFLRAN ADVFAWR
|
| Detection Method: | |
| Confidence: | 26.09691 |
| Match: | 1w5vA |
| Description: | HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [798-1317] |
1 11 21 31 41 51
| | | | | |
1 PADMPGVPRE VIEHRLAVRS GARPVRQKVR RQAPERQAFI REEVARLLEA GFIREVIHPE 60
61 WLANPVVVPK ANGKLRMCID YTDLNKACPK DPYPLPRIDQ IVDSTAGCDL LCFLDAYSGY 120
121 HQIRMAREDE EKTAFITPIG TYCYTTMPFG LKNAGPTFQR TTRISLGSQI GRNVEAYVDD 180
181 LVVKTRNQET LLSDLAETFE SLRSARIKLN PDKCVFGVPA GKLLGFLVSA RGIEANPEKI 240
241 RAIERMRPPS KLRDVQCITG CMAALSRFIS RLGEKALPLF KLLKRSGPFT WTEEAERALT 300
301 QLKAYLSSPP VLVALEPNEP LLLYLAATPQ VVSAALVVER DEDNPHSAHP HPVLAWPGRE 360
361 QGGEAPEPNG GPRPPTTGAG PLPACQTVPG APDPQDGPRA TAGRPHLSPS DPEANPVPTR 420
421 PGREQGEEAP EPNGGLRPLT TGVGPLPACP TTPGAPDPQD GPEATVGRPP LSSSDPEVVG 480
481 TEDECTPEAL RDAKTRYPQA QKMFYAILIA SRKLRHYFQA
|
| Detection Method: | |
| Confidence: | 136.0 |
| Match: | 3drsA |
| Description: | No description for 3drsA was found. |
|
Region A: Residues: [1318-1395] |
1 11 21 31 41 51
| | | | | |
1 HRVTVVTSYP LGQILHNREG TRRVVKWAIE LSEFDLHFEP RHAIKSQALA DFVAEWTPAP 60
61 EPVSVPEASS GPSQPPHT
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1wjbA |
| Description: | N-terminal Zn binding domain of HIV integrase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1396-1646] |
1 11 21 31 41 51
| | | | | |
1 AHWVMQFDGS LSLQGAGAGV TLTSPSGDVL RYLVRLDFQA TNNMAEYEGL LAGLRVAAGL 60
61 GIRRLLVLGD SQLVVNQVCK EYRCSDPQMD AYVRQVRCME HHFDGIELRH VPRRDNTVAD 120
121 ELSRLASSRA ETPPGAFEER LAQPSARPDP LGETDAPDRP PRPVGVQASG PEGSAPSSLR 180
181 LIAWIAEIQA YLTDKTLPED REGSERVQRI SKRYVLVEGT LYRRAANGIL LKCIPREQGV 240
241 ELLANIHEGE C
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1647-1925] |
1 11 21 31 41 51
| | | | | |
1 GAHSASRTLV GKAFRQGFYW PTALNDAVDL VRRCRACQFH AKQIHQPAQA LQIIPLSWSF 60
61 AVWGLDILGP FRRAPGGFEY LYVAIDKFTK WPEAYPVVKI DKHSALKFIK GITARFGVPN 120
121 RIITDNGTQF TSELFGDYCE DMGIKLCFAS PAHPRSNGQV ERANAEILRG LKTKTFNILK 180
181 KHGDSWIEEL PAVLWANQTT PSRATGETPF FLVYGAEAVL PSELTLRSPR ATIYCEADQD 240
241 QLRRDDLDYL EERRRRAALR AARYQQSLRR YHQRHVRAR
|
| Detection Method: | |
| Confidence: | 38.39794 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [1926-1989] |
1 11 21 31 41 51
| | | | | |
1 SLCVDDLVLR RVQTRAGLSK LSPMWEGPYR VIGVPRPGSV RMATGDGTEL PNPWNIEHLR 60
61 RFYP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
