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Protein Overview: gi|25399791

General Information:
Name(s) found: gi|25399791 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • pir||F87546 transcription regulator, AraC family [imported] - Caulobacter crescentus [NCBI NR]
    • Organism: Caulobacter vibrioides
    Length: 312 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSLDEQGV VRTQAGLDAW NALVASTFDN LVVDADREAF EGSIDVRDLG GMDLARVASS  60
   61 AAVVRRGRAS WTRRPYFKLH LQDVGRSLNS QDGREAVLDE GDLMLCDPAR PYTIRFDDPN 120
  121 RMLVLRIPSE RLADRMDDPE ALCGRRLAGD SLAGALLTSF IRTLWTNAGR GCAPVGEAVQ 180
  181 DAALSLLSAA AREGEGEAPA PRDLDASHGA GARIKRFIDD NLCDPELSVG RVAGALGVSP 240
  241 RYVQMVFAGM ATTPLAYIRR KRLERAARAL REDGVGCNIT DLSFGLGFND LSHFSRAFKA 300
  301 FYGVGPREFR AS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] PSI-BLAST 5.522879 Apo form of the Y31V mutant dimerization domain fragment of Escherichia coli regulatory protein AraC
    2 View Details [204..312] PSI-BLAST 17.30103 Rob transcription factor, N-terminal domain; Rob transcription factor, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle