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Protein Overview: gi|29831452, gi|...

General Information:
Name(s) found: gi|29831452 [NCBI NR]
gi|29608567 [NCBI NR]
Description(s) found:
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  • gi|29831452|ref|NP_826086.1| transcription antitermination protein [Streptomyces avermitilis MA-4680] [NCBI NR]
  • gi|29608567|dbj|BAC72621.1| putative transcription antitermination protein [Streptomyces avermitilis MA-4680] [NCBI NR]
  • putative transcription antitermination protein [Streptomyces avermitilis MA-4680]gi|29608567|dbj|BAC72621.1| putative transcription antitermination protein [Streptomyces avermitilis MA-4680] [nrdb_11152004_Chlamydomonas]
  • transcription antitermination protein [Streptomyces avermitilis MA-4680] [nr-271106-contam.fasta]
  • putative transcription antitermination protein [Streptomyces avermitilis MA-4680] [nr-271106-contam.fasta]
    • Organism: Streptomyces avermitilis MA-4680
    Length: 287 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPNLNDAI ESVESVDDEL DIVEGADVED EFEAADADAG EPAEEAAVHV EDESGTDLED  60
   61 DVDAADLAVS DEAEEAEEEA EPVDPVTALR EELRTLPGEW YVIHTYAGYE NRVKTNLEQR 120
  121 AVSLNVEDFI FQAEVPQEEV AQIKNGERKT IRQNKLPGYV LVRMDLTNES WGVVRNTPGV 180
  181 TGFVGNAYDP YPLTLDEIVK MLAPEAEEKA AREAAEAEGK PAPQRKVEVQ VLDFEVGDSV 240
  241 TVTDGPFATL QATINEINAD SKKVKGLVEI FGRETPVELS FDQIQKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] MSA 3.079997 View MSA. No confident structure predictions are available.
    2 View Details [88..217] PSI-BLAST 29.522879 Solution Structure of the N-utilisation substance G (NusG) N-terminal (NGN) domain from Thermus thermophilus
    3 View Details [218..287] PSI-BLAST 14.69897 Solution Structure of the N-utilisation substance G (NusG) C-terminal (NGC) domain from Thermus thermophilus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription termination factor activity
    		•  7.3828495299519 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.63525538465601 bayes_pls_golite062009
    3
    Term Confidence Notes
  • structural constituent of ribosome
    		•  2.40236111142017 bayes_pls_golite062009
  • structural molecule activity
    		•  2.11748533169546 bayes_pls_golite062009
  • transcription termination factor activity
    		•  2.09255447057062 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.05039659348342 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.761013355804059 bayes_pls_golite062009
  • binding
    		•  0.302568764609847 bayes_pls_golite062009
  • DNA binding
    		•  0.302556727687398 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle