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Protein Overview: gi|55167900, gi|...

General Information:
Name(s) found: gi|55167900 [NCBI NR]
gi|53749142 [NCBI NR]
gi|42566075 [NCBI NR]
Description(s) found:
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  • gi|55167900|gb|AAV43782.1| At3g59850 [Arabidopsis thaliana] [NCBI NR]
  • gi|53749142|gb|AAU90056.1| At3g59850 [Arabidopsis thaliana] [NCBI NR]
  • gi|42566075|ref|NP_191544.2| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
  • At3g59850 [Arabidopsis thaliana]gi|53749142|gb|AAU90056.1| At3g59850 [Arabidopsis thaliana]gi|42566075|ref|NP_191544.2| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polygalacturonase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | polygalacturonase, putative / pectinase, putative | chr3:22120320-22122543 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g59850 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr3:22109343-22111566 REVERSE LENGTH=388 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g59850 OS=Arabidopsis thaliana GN=At3g59850 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 388 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSSLLIVLL FLLSVSSSSA QTYNILSYGA KPDGKTDSTK AFTVLWAKAC ASVKPVTILV  60
   61 PKGRFLLRSI IFDGSKCKRK SVTFRIQGTL VAPSDYRVIG KENYWILFQH LDGISVYGGV 120
  121 LDAQGASLWS CKKSGKNCPS GATSIGFQSS RNVVISGLTS LNSQMFHVAI NGCSNVKLDG 180
  181 VKVSADGNSP NTDGIHVQSS STVSILNSKI STGDDCVSIG PGTNGLWIEN VACGPGHGIS 240
  241 IGSLGKESVE VGVQNITVKT ATFTGTENGV RIKSWARPSN GFAKNIRFQH CVMNNVQNPI 300
  301 VIDQNYCPGN ENCPNQVSGI KISDVMFFDI HGTSATEVGV KLDCSSKKPC TGIRIQDVKL 360
  361 TYRNKPATTD CSHAGGSEAG FQRPNSCL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..388] PSI-BLAST 42.69897 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle