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Protein Overview: gi|34222074, gi|...

General Information:
Name(s) found: gi|62320051 [NCBI NR]
gi|34222074 [NCBI NR]
gi|30699219 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|62320051|dbj|BAD94203.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|34222074|gb|AAQ62873.1| At1g76970 [Arabidopsis thaliana] [NCBI NR]
  • gi|30699219|ref|NP_177823.2| VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: Golgi stack [ISS]
    intracellular [IEA]
    Biological Process: intra-Golgi vesicle-mediated transport [ISS]
    intracellular protein transport [IEA][ISS]
    Molecular Function: protein transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANDAAACAE RATNDMLIGP DWAINIELCD LINMDPSQAK EAVKVLKKRL GSKNSKVQIL  60
   61 ALYALETLSK NCGENVYQLI IDRGLLNDMV KIVKKKPELN VREKILTLLD TWQEAFGGRG 120
  121 GRYPQYYNAY NDLRSAGIEF PPRTESSLSF FTPPQTQPDE DAAIQASLQG DDASSLSLEE 180
  181 IQSAEGSVDV LMDMLGAHDP GNPESLKEEV IVDLVEQCRT YQRRVMTLVN TTTDEELLCQ 240
  241 GLALNDNLQH VLQRHDDIAN VGSVPSNGRN TRAPPPVQIV DINHDDEDDE SDDEFARLAH 300
  301 RSSTPTRRPV HGSDSGMVDI LSGDVYKPQG NSSSQGVKKP PPPPPHTSSS SSSPVFDDAS 360
  361 PQQSKSSEVI RNLPPPPSRH NQRQQFFEHH HSSSGSDSSY EGQTRNLSLT SSEPQKEEKP 420
  421 EDLLFKDLVE FAKTRSSKAN NNNRSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 52.39794 The solution structure of the VHS domain of human Signal transducing adaptor molecule 2
    2 View Details [144..310] PSI-BLAST 22.045757 ADP-ribosylation factor binding protein Gga1
    3 View Details [311..446] MSA 4.189996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.098272402754001 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle