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Protein Overview: gi|33237725, gi|...

General Information:
Name(s) found: gi|33240198 [NCBI NR]
gi|33237725 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] [NCBI NR]
  • gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] [NCBI NR]
    • Organism: Prochlorococcus marinus subsp. marinus str. CCMP1375
    Length: 418 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNDRRGGN FSRDFSSKER KNNKRGSSAS MRWKKGNKSE WNQSDHKKDS PYRRDTEKVN  60
   61 FDRGNQKKRN FDNARDSSAS NKASFNSKRA WRSINSEETQ NRSSSNKRQP NLVQSRRFTS 120
  121 FSRNNQNDFS QSTQEIEKPK QNFVFESESN DIFWGRHSTQ AILESGRAIH RIWCTSEIRS 180
  181 SPRFFQLLKD AKALGVLVEE VSWARLGHVT TGGVHQGIAL QTAASETFDL KTLIEGCQSI 240
  241 DESPVLIALD GLTDPQNLGA IVRSAEALGA HGLILPQRRS AGLTGSVAKV AAGALEHLPV 300
  301 ARVVNLNRSL EELKKSGYTI IGLAGEGDKT INEITFDGPL VLAIGSEEKG LSLLTRRHCD 360
  361 FLVKIPLRGV TTSLNASVAT SVVLYEVARQ GWMKGIAGQD PSPKLVRAKL ETKPFQTN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] MSA 8.321997 View MSA. No confident structure predictions are available.
    2 View Details [144..418] PSI-BLAST 59.69897 RlmB, C-terminal domain; RlmB, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA methyltransferase activity
    		•  4.23455016472464 bayes_pls_golite062009
  • methyltransferase activity
    		•  3.59960278169345 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  3.51722801996622 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  3.14976989427746 bayes_pls_golite062009
  • RNA binding
    		•  2.61675538965988 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  2.33123191403389 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.23755555119187 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  2.14623472760939 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.81000672982144 bayes_pls_golite062009
  • transferase activity
    		•  1.63934797352054 bayes_pls_golite062009
  • binding
    		•  1.31970199852267 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.0137045454994 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.736216022000293 bayes_pls_golite062009
  • structural molecule activity
    		•  0.694233763389628 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  0.319046095835882 bayes_pls_golite062009
  • catalytic activity
    		•  0.264002643439785 bayes_pls_golite062009
    		• 0.16936231012632 bayes_pls_golite062009
  • snoRNA binding
    		•  0.155192244522672 bayes_pls_golite062009
  • protein binding
    		•  0.131685221037103 bayes_pls_golite062009
  • rRNA (guanine-N1-)-methyltransferase activity
    		•  6.26422903788337E-4 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle