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Protein Overview: gi|30678425, gi|...

General Information:
Name(s) found: gi|33589790 [NCBI NR]
gi|30678425 [NCBI NR]
gi|30678423 [NCBI NR]
gi|110742779 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|33589790|gb|AAQ22661.1| At1g01640 [Arabidopsis thaliana] [NCBI NR]
  • gi|30678425|ref|NP_850494.1| ribosomal protein L13 family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30678423|ref|NP_186828.2| ribosomal protein L13 family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110742779|dbj|BAE99294.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 205 amino acids

    Gene Ontology:
    Cellular Component: large ribosomal subunit [ISS]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: translation [IEA][ISS]
    Molecular Function: structural constituent of ribosome [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQAAAAAS FKGNLKKAVA GIKRINLDGL RWRVFDARGQ VLGRLASQIS TVLQAKDKPT  60
   61 YCPNRDDGDI CIVLNAKEIG FTGRKLTDKF YRWHTGYIGH LKERSLKDQM AKDPTEVIRK 120
  121 AVWRMLPSNN LRDDRDRKLR IFEGGEHPFG DKPLEPFVMP PRRVREMRPR ARRAMIRAQK 180
  181 KAEQAENEGT EVKKGKKRTL SEVPA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..205] PSI-BLAST 54.154902 70S ribosome functional complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  10.0286073270483 bayes_pls_golite062009
  • structural molecule activity
    		•  9.45133141168812 bayes_pls_golite062009
  • RNA binding
    		•  0.840527362301162 bayes_pls_golite062009
  • binding
    		•  0.77663708544052 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.513360853458228 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle