YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30678425, gi\|...
Organism:	Arabidopsis thaliana
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30678425, gi|....

Description	E-value	Query Range	Subject Range
gi\|26249811, gi\|... - gi\|26249811\|ref\|NP_755851.1\| 50S ribosomal protein L13 [Escherichia coli CFT073], gi\|26110239\|gb\|AAN... gi\|254038390, gi... - gi\|254038390\|ref\|ZP_04872448.1\| 50S ribosomal subunit protein L13 [Escherichia sp. 1_1_43], gi\|22684... gi\|24114518, gi\|... - ref\|NP_709028.1\| 50S ribosomal subunit protein L13 [Shigella flexneri 2a str. 301], gb\|AAN44735.1\| ... gi\|91212650, gi\|... - gi\|91212650\|ref\|YP_542636.1\| 50S ribosomal subunit protein L13 [Escherichia coli UTI89], gi\|91074224... gi\|237706023, gi... - gi\|237706023\|ref\|ZP_04536504.1\| 50S ribosomal subunit protein L13 [Escherichia sp. 3_2_53FAA], gi\|22...	219.0	[0..13]	[159..22]

Back

Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQAAAAAS FKGNLKKAVA GIKRINLDGL RWRVFDARGQ VLGRLASQIS TVLQAKDKPT  60
   61 YCPNRDDGDI CIVLNAKEIG FTGRKLTDKF YRWHTGYIGH LKERSLKDQM AKDPTEVIRK 120
  121 AVWRMLPSNN LRDDRDRKLR IFEGGEHPFG DKPLEPFVMP PRRVREMRPR ARRAMIRAQK 180
  181 KAEQAENEGT EVKKGKKRTL SEVPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.154902
Match:	1p85H
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0286073270483	bayes_pls_golite062009
structural molecule activity	9.45133141168812	bayes_pls_golite062009
RNA binding	0.840527362301162	bayes_pls_golite062009
binding	0.77663708544052	bayes_pls_golite062009
nucleic acid binding	0.513360853458228	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: