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Protein Overview: gi|15220048, gi|...

General Information:
Name(s) found: gi|58331795 [NCBI NR]
gi|54261721 [NCBI NR]
gi|15220048 [NCBI NR]
Description(s) found:
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  • gi|58331795|gb|AAW70395.1| At1g80060 [Arabidopsis thaliana] [NCBI NR]
  • gi|54261721|gb|AAV31164.1| At1g80060 [Arabidopsis thaliana] [NCBI NR]
  • gi|15220048|ref|NP_178123.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • At1g80060 [Arabidopsis thaliana]gi|15220048|ref|NP_178123.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62709.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) | chr1:30121195-30122417 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g80060 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ubiquitin-like superfamily protein | chr1:30116302-30117524 REVERSE LENGTH=243 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g80060 OS=Arabidopsis thaliana GN=At1g80060 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 243 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: protein modification process [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREEHSPVRD GRRSGGLRSL IDPRFLSSFA LNDGGSISGR RSSYLKLPPQ GRIKLSVVKL  60
   61 NGSLFDVEVA KDCSVAELKR AVEQVFTISP LEGHGMISWS HVWGHFCLCY RDQRLVNDKT 120
  121 SIRYLGLNDG DQLHFVRHLS IDHSPMNKRS KSPSCKRYLE LDVSSIVNEI QIQNQNQNGV 180
  181 DDVAEKCYPG AQDELPAAES RLVNLIKGWL PYAGRWGVSR KGPECRSGPS RFSLKHFGGR 240
  241 PKM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] PSI-BLAST 33.09691 Solution Structure of Mouse Hypothetical Gene (RIKEN cDNA 3300001G02) Product Homologous to Ubiquitin Fold
    2 View Details [148..243] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle