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Protein Overview: MBD1_ARATH

General Information:
Name(s) found: MBD1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|58331793|gb|AAW70394.1| At4g22745 [Arabidopsis thaliana] [NCBI NR]
  • gi|54261715|gb|AAV31161.1| At4g22745 [Arabidopsis thaliana] [NCBI NR]
  • gi|30685914|ref|NP_567667.2| MBD1; DNA binding / DNA demethylase/ methyl-CpG binding [Arabidopsis thaliana] [NCBI NR]
  • Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 PE=2 SV=1 [Swiss-Prot]
  • At4g22745 [Arabidopsis thaliana]gi|30685914|ref|NP_567667.2| methyl-CpG-binding domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: MBD1 | MBD1 (methyl-CpG-binding domain 1); DNA binding | chr4:11947432-11948525 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • MBD1; DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At4g22745 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MBD1 | methyl-CPG-binding domain 1 | chr4:11947421-11948514 REVERSE LENGTH=204 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 204 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: DNA binding [ISS]
    [NOT]cytosine C-5 DNA demethylase activity [IDA]
    methyl-CpG binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPFPAMNLK KSRSENSSVA SSGSKIEEQT EKSAEPTTIK VQKKAGTPGR SIDVFAVQCE  60
   61 KCMKWRKIDT QDEYEDIRSR VQEDPFFCKT KEGVSCEDVG DLNYDSSRTW VIDKPGLPRT 120
  121 PRGFKRSLIL RKDYSKMDAY YITPTGKKLK SRNEIAAFID ANQDYKYALL GDFNFTVPKV 180
  181 MEETVPSGIL SDRTPKPSRK VTID

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] deduced N/A No confident structure predictions are available.
    2 View Details [94..204] PSI-BLAST 21.045757 Solution structure of the matrix attachment region-binding domain of chicken MeCP2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.339357445627225 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle