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Protein Overview: INO80_ARATH

General Information:
Name(s) found: INO80_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1507 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: positive regulation of DNA repair [IMP]
    regulation of transcription [IMP]
    somatic cell DNA recombination [IMP]
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA][ISS]
    ATP binding [IEA][ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSRRPPKD SPYANLFDLE PLMKFRIPKP EDEVDYYGSS SQDESRSTQG GVVANYSNGS  60
   61 KSRMNASSKK RKRWTEAEDA EDDDDLYNQH VTEEHYRSML GEHVQKFKNR SKETQGNPPH 120
  121 LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE 180
  181 PSYLDIGDGV IYKIPPSYDK LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG 240
  241 VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS 300
  301 EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA 360
  361 KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR TAPIRTRKIS RDMLLFWKRY 420
  421 DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA 480
  481 LPIGDENPID EVLPETSAAE PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK 540
  541 LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC 600
  601 YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD 660
  661 LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ LLVTDEKYFR RVKWQYMVLD 720
  721 EAQAIKSSSS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPML FDNHDQFNEW 780
  781 FSKGIENHAE HGGTLNEHQL NRLHAILKPF MLRRVKKDVV SELTTKTEVT VHCKLSSRQQ 840
  841 AFYQAIKNKI SLAELFDSNR GQFTDKKVLN LMNIVIQLRK VCNHPELFER NEGSSYLYFG 900
  901 VTSNSLLPHP FGELEDVHYS GGQNPIIYKI PKLLHQEVLQ NSETFCSSVG RGISRESFLK 960
  961 HFNIYSPEYI LKSIFPSDSG VDQVVSGSGA FGFSRLMDLS PSEVGYLALC SVAERLLFSI1020
 1021 LRWERQFLDE LVNSLMESKD GDLSDNNIER VKTKAVTRML LMPSKVETNF QKRRLSTGPT1080
 1081 RPSFEALVIS HQDRFLSSIK LLHSAYTYIP KARAPPVSIH CSDRNSAYRV TEELHQPWLK1140
 1141 RLLIGFARTS EANGPRKPNS FPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK1200
 1201 LLTDSGKLQT LDILLKRLRA GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD1260
 1261 RRDMVRDFQH RSDIFVFLLS TRAGGLGINL TAADTVIFYE SDWNPTLDLQ AMDRAHRLGQ1320
 1321 TKDVTVYRLI CKETVEEKIL HRASQKNTVQ QLVMTGGHVQ GDDFLGAADV VSLLMDDAEA1380
 1381 AQLEQKFREL PLQVKDRQKK KTKRIRIDAE GDATLEELED VDRQDNGQEP LEEPEKPKSS1440
 1441 NKKRRAASNP KARAPQKAKE EANGEDTPQR TKRVKRQTKS INESLEPVFS ASVTESNKGF1500
 1501 DPSSSAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] MSA 1.222993 View MSA. No confident structure predictions are available.
    2 View Details [112..301] deduced N/A No confident structure predictions are available.
    3 View Details [302..483] deduced N/A No confident structure predictions are available.
    4 View Details [484..578] deduced N/A No confident structure predictions are available.
    5 View Details [579..1059] PSI-BLAST 86.0 Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA
    6 View Details [1060..1115] deduced N/A No confident structure predictions are available.
    7 View Details [1116..1397] PSI-BLAST 41.30103 Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain
    8 View Details [1398..1507] MSA 1.334996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle