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Protein Overview: HMP_DEIRA

General Information:
Name(s) found: HMP_DEIRA [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Flavohemoprotein OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=hmp PE=3 SV=1 [Swiss-Prot]
    • Organism: Deinococcus radiodurans R1
    Length: 403 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTPEQKAIV KATVPALEAH GETITRTFYA SMFAAHPELL NIFNPANQQT GKQARSLAAS  60
   61 VLAYAAHIDH PEALGGMVGR IAHKHVSLEV LPEHYPIVGQ YLLGAIAGVL GDAAKPEILD 120
  121 AWAAAYGELA DLMIGIEKGM YDAGAGQPGG WRDFRPFRVA RKVAESRVIT SFVLEPVGGG 180
  181 ALPAYQPGQY LSLKVKVPGQ ERWQIRQYSL SDAPSPDHYR ISVKREGGGL VSEYLHGAVQ 240
  241 EGDELLVHVP AGDFVLQQSE RPVVLISAGV GITPMLAMVQ TLAQAGSQRP VTFIHAAQNG 300
  301 SVHAFRDDVA RLTHEYPHFR KVVFYDEAGP DDQLGTHHDV AGRLSLDAVR GALPAGEAEF 360
  361 YYCGPAGFAG AVEAILDDLQ VPAERRFTET FGPSQSFAPV ILG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..403] PSI-BLAST 66.522879 Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxygen transporter activity
    		•  7.81281381234264 bayes_pls_golite062009
  • oxygen binding
    		•  3.78522064312431 bayes_pls_golite062009
  • hemoglobin binding
    		•  3.17505496298935 bayes_pls_golite062009
  • transporter activity
    		•  2.77225108027137 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.44807175467553 bayes_pls_golite062009
  • catalytic activity
    		•  2.05427820269334 bayes_pls_golite062009
  • binding
    		•  1.4855235778453 bayes_pls_golite062009
  • hemoglobin alpha binding
    		•  1.07662870695556 bayes_pls_golite062009
  • nitric-oxide synthase activity
    		•  0.943011064240739 bayes_pls_golite062009
  • transferase activity
    		•  0.708491789248912 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen
    		•  0.426427097788618 bayes_pls_golite062009
  • riboflavin synthase activity
    		•  0.366634814975673 bayes_pls_golite062009
  • protein binding
    		•  0.195144485644841 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle