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Protein Overview: gi|39998460, gi|...

General Information:
Name(s) found: gi|39998460 [NCBI NR]
gi|39985407 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|39998460|ref|NP_954411.1| AP endonuclease [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39985407|gb|AAR36761.1| AP endonuclease, family 2 [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 256 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRIHAHVP YPMLADNLTA VAARGINPEV HFSGEALDSL VPEKLIAVAD TLNATGLRST  60
   61 IHAPFVDLNP GSAERLIREA TRHRLNQVID AAAILRPDVI VFHPGYDRWR YGENQDIWLA 120
  121 HSIETWRRVL ERTEPIGCTV AVENIFEEEP STLRALLEEI DHPRFCHCFD VGHWNLFHTV 180
  181 GMEEWFDAMG RFVAEAHIHD NFGTRDDHLP LGEGAIDFDL FFSLMARHAP QAVWTIEAHC 240
  241 PAALDRALVA IERYRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..256] PSI-BLAST 42.30103 Hypothetical protein YgbM (EC1530)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.66019571685402 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.97458966528485 bayes_pls_golite062009
  • DNA-(apurinic or apyrimidinic site) lyase activity
    		•  0.36517654808269 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.19550406288989 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle