YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|39998442, gi|...

General Information:
Name(s) found: gi|39998442 [NCBI NR]
gi|39985389 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|39998442|ref|NP_954393.1| RNA pseudouridine synthase family protein [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39985389|gb|AAR36743.1| RNA pseudouridine synthase family protein [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 296 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA modification [ISSLink to PubMed article]
    Molecular Function: pseudouridine synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTARVGAD QAGVRLDEGA ARLFPQLSKT RIRTIIDWGG CAVGGTMVRV ASRRLQAGDE  60
   61 IVLGVMEPER YREITLAPED ILFEDGGYLA VNKASGLNCQ RTPYQLKGTV EYAVTLHFRA 120
  121 CGSAEPARVI HRLDRGTSGV MIFPASRRAA AHISRELKEG RVEKVYWALV AGMPLADSWQ 180
  181 VDAPVAKVGT SRYGVAPVGK AALTEFRVVA RGNGATLVEA RPRTGRTHQI RVHLAHGGLS 240
  241 IIGDTTYGGI AAPRMMLHCR TMTFRAEDGR PVSATAPPDR EFTAACEQHG IQFGGA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..296] PSI-BLAST 64.69897 Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle