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Protein Overview: gi|39985196, gi|...

General Information:
Name(s) found: gi|39998250 [NCBI NR]
gi|39985196 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|39998250|ref|NP_954201.1| RNA pseudouridine synthase family protein [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39985196|gb|AAR36551.1| RNA pseudouridine synthase family protein [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 250 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA modification [ISSLink to PubMed article]
    Molecular Function: pseudouridine synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILFRDQYL VAVHKPAGLL VHRSPIDRHE TRFALQEVRD LLGRRVYPVH RLDKPTSGVL  60
   61 VFALDPATAR SLGDAFAGGR VNKTYLAVTR GIVPPEGIID HSLSEEPDRL DGAKSSPAAP 120
  121 QPAVTVFRRL AEAELPVVTG RYASSRYSLA ELTPHTGRRH QLRRHMKHIF HPIIGDTTYG 180
  181 EGRHNRFFRE EFGCGRLLLH AAELSLPHPA SGETLTIAAP PDRELARLLD RLGWLAAATG 240
  241 RGRPGMPAPP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 55.0 Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle