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Protein Overview: PYRF_GEOSL

General Information:
Name(s) found: PYRF_GEOSL [Swiss-Prot]
Description(s) found:
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  • gi|39996561|ref|NP_952512.1| orotidine 5`-phosphate decarboxylase [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39983442|gb|AAR34835.1| orotidine 5`-phosphate decarboxylase [Geobacter sulfurreducens PCA] [NCBI NR]
  • Orotidine 5'-phosphate decarboxylase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=pyrF PE=3 SV=1 [Swiss-Prot]
  • orotidine 5`-phosphate decarboxylase [Geobacter sulfurreducens PCA]gi|39983442|gb|AAR34835.1| orotidine 5`-phosphate decarboxylase [Geobacter sulfurreducens PCA] [nrdb_11152004_Chlamydomonas]
  • orotidine 5`-phosphate decarboxylase [Geobacter sulfurreducens PCA] [nr-271106-contam.fasta]
    • Organism: Geobacter sulfurreducens PCA
    Length: 239 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pyrimidine ribonucleotide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: orotidine-5'-phosphate decarboxylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRDQAREKV IFALDSSEFA HVQYWAETLS DRVGMFKVGK QLFTACGPAT VRMIQKFGGE  60
   61 VFLDLKFHDI PNTVAMASLE AARLGVKLFN LHALGGYEMM ARTVEALDKE FKGGERAKVL 120
  121 AVTILTSSTE ETLRQVGIES PVEEMVVRLA TLARKAGIDG VVASPREIPL IREACGPDFL 180
  181 IVTPGVRPAF AALNDQKRVM TPAEAVRAGG DYLVIGRPIG DAPDPAGAAE MILDEIMAG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] PSI-BLAST 54.09691 Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • orotidine-5'-phosphate decarboxylase activity
    		•  2.87717797280068 bayes_pls_golite062009
  • catalytic activity
    		•  2.44231061702877 bayes_pls_golite062009
  • ribulose-phosphate 3-epimerase activity
    		•  0.982517927791965 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.83446736141993 bayes_pls_golite062009
  • orotate phosphoribosyltransferase activity
    		•  0.108467338662618 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle