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Protein Overview: TRMD_GEOSL

General Information:
Name(s) found: TRMD_GEOSL [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • tRNA (guanine-N(1)-)-methyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=trmD PE=3 SV=1 [Swiss-Prot]
    • Organism: Geobacter sulfurreducens PCA
    Length: 245 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA methylation [ISSLink to PubMed article]
    Molecular Function: tRNA (guanine-N1-)-methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFDILTLFP AMFDGPLTES IIRRAVERGF VDISLHNIRD YATDRHRVVD DAPYGGGDGM  60
   61 VMKVEPLAAC IEAVKAERPA ARVILTTPRG RRFDHDAARE LAGYEELIIV CGRYEGIDER 120
  121 VRDLFVDDEF SIGDFVLTGG ELAAMVMIDA VIRFIPGVLG SPGSAEYDSF ADGLLEYPQY 180
  181 TRPVEFRGVQ VPGVLLSGNH AEISRWRRQK ALELTRRVRP DLLHKAELSS SDRDCLAMLE 240
  241 REGEP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..245] PSI-BLAST 115.0 tRNA(m1G37)-methyltransferase TrmD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA methyltransferase activity
    		•  4.77771076540343 bayes_pls_golite062009
  • methyltransferase activity
    		•  4.0901595540349 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.01958090893547 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  3.35439517507384 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  3.10060782124076 bayes_pls_golite062009
  • tRNA (guanine-N1-)-methyltransferase activity
    		•  2.87460031907348 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.59156540645412 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  1.86192852581774 bayes_pls_golite062009
  • transferase activity
    		•  1.84002196534744 bayes_pls_golite062009
  • catalytic activity
    		•  1.16774040077235 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.0655574594365502 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle