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Protein Overview: gi|39982401, gi|...

General Information:
Name(s) found: gi|39995638 [NCBI NR]
gi|39982401 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|39995638|ref|NP_951589.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39982401|gb|AAR33862.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 282 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lysine biosynthetic process via diaminopimelate [ISSLink to PubMed article]
    Molecular Function: diaminopimelate epimerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTKMHGAG NDYVYVNCFE ETVGNPEQTA IKVSNRNFGI GSDGLILIMP SDKADVRMRM  60
   61 FNSDGSESEM CGNGIRCVAK YAYDHGIVTK KEITAETGAG VLTLQLFTGA DGRVDRVRVN 120
  121 MGKPRLTRAE IPMLGDPGDG QVVGQPLNIL HTTFNITCVS MGNPHCVIFV DDVENFQVEK 180
  181 YGPLIENHEM FPRRTNVEFV QIISRTEVRQ RTWERGAGET LACGTGASAV CVAGALNGLT 240
  241 EKNILNHLSG GDLELEWAED GFLYMTGPAT EVFSGEINLG TL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..282] PSI-BLAST 81.045757 Diaminopimelate epimerase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • diaminopimelate epimerase activity
    		•  4.22926504608084 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  3.36270508746492 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  3.23874676534548 bayes_pls_golite062009
  • catalytic activity
    		•  1.37892559560737 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.0469151339756061 bayes_pls_golite062009
  • isomerase activity
    		•  0.0304048110491 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle