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Protein Overview: DAPB_GEOSL

General Information:
Name(s) found: DAPB_GEOSL [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • 4-hydroxy-tetrahydrodipicolinate reductase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=dapB PE=3 SV=1 [Swiss-Prot]
    • Organism: Geobacter sulfurreducens PCA
    Length: 266 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lysine biosynthetic process via diaminopimelate [ISSLink to PubMed article]
    Molecular Function: dihydrodipicolinate reductase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKIAVCGAA GRMGQRIIVA AREAGCTISG ALERPGHEMV GQDAGLIAGC GALGVAISDD  60
   61 LNAVVEGCDV LIDFTTPKVS LKNLEVCALK KKSIVIGSTG FTPEERALAV ELAREIPAVL 120
  121 APNMSVGVNV CFKILKDVAK TLGDDFDVEI VELHHNKKKD APSGTAVRMG EVVAEALGRD 180
  181 YNKVATYHRE GICGERTKEE IGMQTVRGGD IVGEHTVYFI GMGERIEISH RAMTRDMFSR 240
  241 GSVRAAQWVV GKAPGLYDMQ DVLGLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..266] PSI-BLAST 87.69897 Dihydrodipicolinate reductase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity
    		•  2.60548927745815 bayes_pls_golite062009
  • catalytic activity
    		•  2.54843319568228 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  1.54909195188343 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  0.841370849960815 bayes_pls_golite062009
  • saccharopine dehydrogenase activity
    		•  0.495113665163626 bayes_pls_golite062009
  • N-acetyl-gamma-glutamyl-phosphate reductase activity
    		•  0.0651785123513661 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle